Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 11,371,394 – 11,371,496 |
Length | 102 |
Max. P | 0.571587 |
Location | 11,371,394 – 11,371,496 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 83.70 |
Mean single sequence MFE | -30.10 |
Consensus MFE | -19.53 |
Energy contribution | -20.53 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.33 |
Structure conservation index | 0.65 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.571587 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11371394 102 + 23771897 UGGCCAUUG------CCGUUGCCAAUUUCCGGAAAAUGGCAAUGGGCAUCACGAGCAGCAGAAGCGCCGGCCGUUGGGCGUAAAUUAAAAUUAAAUUCAAAUGGAAAA ((.((((((------(((((.((.......))..))))))))))).))((.((.((.((....))))))(((....)))........................))... ( -30.10) >DroPse_CAF1 103649 96 + 1 UGGCCAGAGCAGAGCCCGUUGCCAAUUUCCGGCAAAUGGCAUUGGGCAGCGGGAA------------AGGCCGUUGGGCGUAAAUUAAAAUUAAAUUCAAAUGGAAAA .(.((((.((....(((((((((.....(((.....))).....)))))))))..------------..))..)))).)............................. ( -30.20) >DroSec_CAF1 91687 102 + 1 UGGCCAUUG------CCGUUGCCAAUUUCCGGAAAAUGGCAAUGGGCAUCACGAGCAGCUGAAGCGCCGGCCGUUGGGCGUAAAUUAAAAUUAAAUUCAAAUGGAAAA ((.((((((------(((((.((.......))..))))))))))).))((.((.((.((....))))))(((....)))........................))... ( -30.30) >DroYak_CAF1 86492 102 + 1 UGGCCAUUG------CCGUUGCCAAUUUCCGGAAAAUGGCAAUGGGCAUCACGAGCAGCAGAAGCGUCGGCCGUUGGGCGUAAAUUAAAAUUAAAUUCAAAUGGAAAA ((.((((((------(((((.((.......))..))))))))))).))((.(((((.......)).)))(((....)))........................))... ( -29.00) >DroAna_CAF1 83204 91 + 1 UGGCCAUUG------CCGUUGCCAAUUUCCGGCAAAUGGCAAUGGGCA----GAGCUCCA-------CUGCCGUUGGGCGUAAAUUAAAAUUAAAUUCAAAUGGAAAA ((.((((((------((((((((.......))).))))))))))).))----..((((.(-------(....)).))))............................. ( -30.80) >DroPer_CAF1 104855 96 + 1 UGGCCAGAGCAGAGCCCGUUGCCAAUUUCCGGCAAAUGGCAUUGGGCAGCGGGAA------------AGGCCGUUGGGCGUAAAUUAAAAUUAAAUUCAAAUGGAAAA .(.((((.((....(((((((((.....(((.....))).....)))))))))..------------..))..)))).)............................. ( -30.20) >consensus UGGCCAUUG______CCGUUGCCAAUUUCCGGAAAAUGGCAAUGGGCAUCACGAGCAGCA_______CGGCCGUUGGGCGUAAAUUAAAAUUAAAUUCAAAUGGAAAA ...(((((.......(((((((((.((......)).)))))))))........................(((....)))....................))))).... (-19.53 = -20.53 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:04 2006