Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,131,082 – 1,131,174 |
Length | 92 |
Max. P | 0.590867 |
Location | 1,131,082 – 1,131,174 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 73.67 |
Mean single sequence MFE | -19.63 |
Consensus MFE | -7.57 |
Energy contribution | -8.43 |
Covariance contribution | 0.86 |
Combinations/Pair | 1.19 |
Mean z-score | -1.97 |
Structure conservation index | 0.39 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.590867 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1131082 92 + 23771897 UAUCUGGUUUCUUUGCAUGCAUACAUAUAUGUAUGU-UGUAUAUGCAUAUCGGA--AUAGGAAUAGGAAUAUAAUGAAAUGCAAGAGGGCCAAAC ....(((((..((((((((((((((....)))))))-..(((((...((((...--....).)))...))))).....)))))))..)))))... ( -21.70) >DroSec_CAF1 24467 93 + 1 UAUCUGGUUUCUUUGCAUGCACACAUAUAUGUAUGUAUGUAUACGCAUAUCGGA--AUAGGAAUAGGAAUAUAAUGAAAUGCAAGAGGGCCAAAC ....(((((((((((((((((.(((....))).))))))))...((((.(((..--(((..........)))..))).)))))))).)))))... ( -22.40) >DroSim_CAF1 22247 93 + 1 UAUCUGGUUUCUUUGCAUGCACACAUAUAUGUAUGUAUGUAUAUGCAUAUCGGA--AUAGGAAUAGGAAUAUAAUGAAAUGCAAGAGGGCCAAAC ....(((((.(((((((((((.(((....))).)))))))...(((((.(((..--(((..........)))..))).))))))))))))))... ( -22.30) >DroEre_CAF1 22469 80 + 1 UAUCUGGUUUCUUUGCACGCACACAUACAUAGCG----------GAAUAUA-----AUACAUAUGGGAGUAUAAUGAAAUGCAAGAGGGCCAAGC ....(((((..(((((((((...........)))----------...(((.-----((((........)))).)))...))))))..)))))... ( -17.80) >DroYak_CAF1 25100 85 + 1 UAUCUGGUUUCUUUGCAUGCAUACAUACAUAGCG----------GAAUAUAGGAGUAUAGGAAUAGCAAUAUAAUGAAAUGCAAGAGGGCCAAAC ....(((((..(((((((..((((.(..(((...----------...)))..).))))....(((....)))......)))))))..)))))... ( -15.40) >DroAna_CAF1 27613 75 + 1 UAUCUUGUAUAUAUCU-----UUCAUAU------CU-UGUAUACAUAUACAAGA--GUAUGUAUUGGAAUAUAAUGAAAUGCAAGAGUG------ ..((((((((((((((-----..(((((------((-(((((....))))))))--.))))....)).)))))......)))))))...------ ( -18.20) >consensus UAUCUGGUUUCUUUGCAUGCACACAUAUAUGUAUGU_UGUAUA_GCAUAUAGGA__AUAGGAAUAGGAAUAUAAUGAAAUGCAAGAGGGCCAAAC ....(((((..(((((((......((((........................................))))......)))))))..)))))... ( -7.57 = -8.43 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:46 2006