Locus 392

Sequence ID 3L_DroMel_CAF1
Location 1,131,082 – 1,131,174
Length 92
Max. P 0.590867
window575

overview

Window 5

Location 1,131,082 – 1,131,174
Length 92
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 73.67
Mean single sequence MFE -19.63
Consensus MFE -7.57
Energy contribution -8.43
Covariance contribution 0.86
Combinations/Pair 1.19
Mean z-score -1.97
Structure conservation index 0.39
SVM decision value 0.12
SVM RNA-class probability 0.590867
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1131082 92 + 23771897
UAUCUGGUUUCUUUGCAUGCAUACAUAUAUGUAUGU-UGUAUAUGCAUAUCGGA--AUAGGAAUAGGAAUAUAAUGAAAUGCAAGAGGGCCAAAC
....(((((..((((((((((((((....)))))))-..(((((...((((...--....).)))...))))).....)))))))..)))))... ( -21.70)
>DroSec_CAF1 24467 93 + 1
UAUCUGGUUUCUUUGCAUGCACACAUAUAUGUAUGUAUGUAUACGCAUAUCGGA--AUAGGAAUAGGAAUAUAAUGAAAUGCAAGAGGGCCAAAC
....(((((((((((((((((.(((....))).))))))))...((((.(((..--(((..........)))..))).)))))))).)))))... ( -22.40)
>DroSim_CAF1 22247 93 + 1
UAUCUGGUUUCUUUGCAUGCACACAUAUAUGUAUGUAUGUAUAUGCAUAUCGGA--AUAGGAAUAGGAAUAUAAUGAAAUGCAAGAGGGCCAAAC
....(((((.(((((((((((.(((....))).)))))))...(((((.(((..--(((..........)))..))).))))))))))))))... ( -22.30)
>DroEre_CAF1 22469 80 + 1
UAUCUGGUUUCUUUGCACGCACACAUACAUAGCG----------GAAUAUA-----AUACAUAUGGGAGUAUAAUGAAAUGCAAGAGGGCCAAGC
....(((((..(((((((((...........)))----------...(((.-----((((........)))).)))...))))))..)))))... ( -17.80)
>DroYak_CAF1 25100 85 + 1
UAUCUGGUUUCUUUGCAUGCAUACAUACAUAGCG----------GAAUAUAGGAGUAUAGGAAUAGCAAUAUAAUGAAAUGCAAGAGGGCCAAAC
....(((((..(((((((..((((.(..(((...----------...)))..).))))....(((....)))......)))))))..)))))... ( -15.40)
>DroAna_CAF1 27613 75 + 1
UAUCUUGUAUAUAUCU-----UUCAUAU------CU-UGUAUACAUAUACAAGA--GUAUGUAUUGGAAUAUAAUGAAAUGCAAGAGUG------
..((((((((((((((-----..(((((------((-(((((....))))))))--.))))....)).)))))......)))))))...------ ( -18.20)
>consensus
UAUCUGGUUUCUUUGCAUGCACACAUAUAUGUAUGU_UGUAUA_GCAUAUAGGA__AUAGGAAUAGGAAUAUAAUGAAAUGCAAGAGGGCCAAAC
....(((((..(((((((......((((........................................))))......)))))))..)))))... ( -7.57 =  -8.43 +   0.86) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:46 2006