Locus 3917

Sequence ID 3L_DroMel_CAF1
Location 11,343,104 – 11,343,207
Length 103
Max. P 0.626823
window6097

overview

Window 7

Location 11,343,104 – 11,343,207
Length 103
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 82.58
Mean single sequence MFE -24.14
Consensus MFE -18.98
Energy contribution -18.82
Covariance contribution -0.16
Combinations/Pair 1.20
Mean z-score -1.51
Structure conservation index 0.79
SVM decision value 0.19
SVM RNA-class probability 0.626823
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11343104 103 + 23771897
U---UGUACCUCCGACUGCGUGGCAAUAAGUGUGCCCCGUUCAUGGGGCAAUGCAAAAAAAAAAGA---AAAUAACACACAAAACAGCAUUAAGCAUCUUGUUGUUCCU
.---...............(..(((((((((((((((((....))))))(((((............---.................)))))..))).))))))))..). ( -25.15)
>DroSec_CAF1 63658 105 + 1
U---UGUACCUCCGACUGCGUGGCAAUAAGUGUGCCCCAUUCACGGGGCAAUGCAAAAAAAAGAGAAAAAAAAAACACACAAAACAGCAUUAAGCAUCUUGUUGUC-CU
.---...............(.(((((((((((((((((......)))))(((((................................)))))..))).)))))))))-). ( -25.15)
>DroEre_CAF1 67939 101 + 1
U---UGUACCUCCGACUGCGUGGCAAUAAGUGUGCCCCGUUCACGGGGCAAUGCAAAAAA--CGUUCAA--AAAAAGCACAAAACAGCAUUAAGCAUCUUGUUGUU-CU
.---.................((((((((((((((((((....))))))(((((......--.(((...--....)))........)))))..))).)))))))))-.. ( -25.76)
>DroYak_CAF1 57152 105 + 1
U---UGUGCCUCCGACUGCGUGGCAAUAAGUGUGCCCCGUUCAUGGGGCAAUACAAAAAAAAAAGUCAAAUAAAAAGCACAAAACAGCAUUAAGCAUCUUGUUGUU-CU
(---((((((..((....))..)......((((((((((....)))))).))))......................))))))(((((((..........)))))))-.. ( -26.90)
>DroAna_CAF1 54455 96 + 1
C---UGUAUCUUCGACUGCGUGGCAAUAAGUGUGCCCCGUUCAUGAGGCAACGCAAAAAAA---------UACAAAACAGAAAACAGCAUUAAGCAUCUUGUUGUU-GU
(---(((....(((...(((.((((.......)))).)))...)))(....).........---------......))))...((((((.((((...)))).))))-)) ( -19.70)
>DroPer_CAF1 75072 93 + 1
UGUGUGUAUCUUCGACUGCGUGGCAAUAAGUGUGCCCCGUUCACGAGGCAACGCGAAAAAAAA-G-------------ACA-AAAAGCAUUAAGCAUCUUGUUGUU-GU
..(((((..(((((...(((.((((.......)))).)))...)))))..)))))........-(-------------(((-(...((.....))...)))))...-.. ( -22.20)
>consensus
U___UGUACCUCCGACUGCGUGGCAAUAAGUGUGCCCCGUUCACGGGGCAAUGCAAAAAAAAAAG______AAAAAACACAAAACAGCAUUAAGCAUCUUGUUGUU_CU
.....................((((((((((((((((((....)))))).))))................................((.....))...))))))))... (-18.98 = -18.82 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:56 2006