Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 11,336,027 – 11,336,147 |
Length | 120 |
Max. P | 0.913388 |
Location | 11,336,027 – 11,336,147 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.88 |
Mean single sequence MFE | -25.19 |
Consensus MFE | -12.29 |
Energy contribution | -15.37 |
Covariance contribution | 3.08 |
Combinations/Pair | 1.09 |
Mean z-score | -2.76 |
Structure conservation index | 0.49 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.913388 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11336027 120 + 23771897 UUUUUCUCGAAAUUGAUAUUGAUGAAAUGUAUACCACUCGGUUAUAUAACGUGAGUAGUAUCCAUUUCAGUUUCGCAUUGAAUGAGCCCUAAUUUAAUUUUAAUUCAUUAAUCCUUCAGA ....(((.(((((((((((((((((((((.((((.((((((((....))).))))).)))).))))))).......(((((((........))))))).)))))..))))))..)))))) ( -22.50) >DroSec_CAF1 56625 112 + 1 UUUUCCUCGAAAUUGAUAUUGAUGAAAUGUAUACCACUCGGUUAUAUAACGUGAGUUGUAUCCAUUUC--------AUUGAAUGUGCCCUAAUUUAAUAUCAAUUCAUUAAUACUUAAUA ........(((.(((((((((((((((((.((((.((((((((....))).))))).)))).))))))--------)))((((........))))))))))))))).............. ( -26.80) >DroSim_CAF1 64075 112 + 1 UUUUCCUCGAAAUUGAUAUUGAUGAAAUGUAUACCACUCGGUUAUAUAACGUGAGUUGUAUCCAUUUC--------AUUGAAUGUGCCCUAAUUUAAUAUCAAUUCAUUAAUCCUUAAGA ........(((.(((((((((((((((((.((((.((((((((....))).))))).)))).))))))--------)))((((........))))))))))))))).............. ( -26.80) >DroEre_CAF1 60686 105 + 1 UUUUCCUCGAAACUGAUAUUGAUGCAAUGUAU---------------CACGUGAUUUGUAUCCGUUUCAGUUUCGAAUUGAAUGAGCACUAAUUUAAUAUCAAUUCAUUAAUCCUAUAUU ......((((((((((.((.(((((((...((---------------(....)))))))))).)).))))))))))(((((((........)))))))...................... ( -25.10) >DroYak_CAF1 49557 120 + 1 UUUUACUCGAAAUUGAUAUUGAUGCAAUGUAUACCACUCGGUUAUAUAGCGUGAAUUGUAUCCGUUUCAGUUUCGAAUUCUAUGAGCACUAAUUUAAUAGCAAUUCAUUAAGCCUGAAUA ........((((((((.((.(((((((((((((((....)).))))).......)))))))).)).))))))))(((((((((.............)))).))))).............. ( -24.73) >consensus UUUUCCUCGAAAUUGAUAUUGAUGAAAUGUAUACCACUCGGUUAUAUAACGUGAGUUGUAUCCAUUUCAGUUUCG_AUUGAAUGAGCCCUAAUUUAAUAUCAAUUCAUUAAUCCUUAAUA ........(((.(((((((((((((((((.((((.((((((((....))).))))).)))).)))))))........................))))))))))))).............. (-12.29 = -15.37 + 3.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:55 2006