| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,333,633 – 11,333,726 |
| Length | 93 |
| Max. P | 0.638159 |
| Location | 11,333,633 – 11,333,726 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 76.00 |
| Mean single sequence MFE | -13.43 |
| Consensus MFE | -12.17 |
| Energy contribution | -12.17 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.09 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.638159 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11333633 93 - 23771897 AGACGCCGCGUUACAAGCACUCCAAAUUGCUCACUUCUCGAGGCGCUCCGUUUAAAUCCUUCCCCCC-ACCCCGC---ACCUAUUUAUGCCCCAUCG .((((((.((.....((((........)))).......)).)))).))...................-.....((---(........)))....... ( -13.00) >DroEre_CAF1 58187 77 - 1 AGACGCCGCGUUACAAGCACUCCAAAUUGCUCACUUCUCGAGGCGCUCUGUUU---------UCCCC-GC-CCGC---------UUCUGCCCCACCG (((((((.((.....((((........)))).......)).)))).)))....---------.....-..-..((---------....))....... ( -14.10) >DroYak_CAF1 46860 85 - 1 AGACGCCGCGUUACAAGCACUCCAAAUUGCUCACUUCUCGAGGCGCUCUCCCU---------UGCCCCUU-CUGCCCCACC--AUAAUGCCCCACCG .......((((((..((((........))))........((((.((.......---------.)).))))-..........--.))))))....... ( -13.20) >consensus AGACGCCGCGUUACAAGCACUCCAAAUUGCUCACUUCUCGAGGCGCUCUGUUU_________UCCCC_AC_CCGC___ACC___UUAUGCCCCACCG .((((((.((.....((((........)))).......)).)))).))................................................. (-12.17 = -12.17 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:52 2006