Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 11,328,386 – 11,328,476 |
Length | 90 |
Max. P | 0.511966 |
Location | 11,328,386 – 11,328,476 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 88.33 |
Mean single sequence MFE | -17.68 |
Consensus MFE | -14.19 |
Energy contribution | -14.55 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.05 |
Mean z-score | -1.93 |
Structure conservation index | 0.80 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.511966 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11328386 90 + 23771897 -----UAUGUUUGCACAUUGAUAAGCUCGAUGUGAAAACAUAAACAAAUAUUUAUGCGCCUAUUAAUGCCCAUACACACAGGCCCUGUCCCCAUC -----(((((((.((((((((.....)))))))).)))))))..........((((.((........)).))))...((((...))))....... ( -18.40) >DroSec_CAF1 49036 90 + 1 -----UAUGUUUGCACAUUGAUAAGCUCGAUGUGAAAACAUAAACAAAUAUUUAUGCGCCUAUUAAUGCCCAUGCACACAGGCCCUGUUCCCAUC -----(((((((.((((((((.....)))))))).)))))))...............((((.....(((....)))...))))............ ( -20.90) >DroSim_CAF1 56206 90 + 1 -----UAUGUUUGCACAUUGAUAAGCUCGAUGUGAAAACAUAAACAAAUAUUUAUGCGCCUAUUAAUGCCCAUGCACACAGGCCCUGUUCCCAUC -----(((((((.((((((((.....)))))))).)))))))...............((((.....(((....)))...))))............ ( -20.90) >DroEre_CAF1 53049 86 + 1 -----UAUGUUUGCACAUUGAUAAGCUGAAUGUGAAAACAUAAACAAAUAUUUAUGCGCCUAUUAAUGCCCAU----ACAGUCCCUGUCCCCAUA -----(((((((.((((((.(.....).)))))).)))))))..........((((.((........)).)))----)................. ( -14.00) >DroYak_CAF1 41362 86 + 1 -----UAUGUUUGCACAUUGAUAAGCUCGAUGUGAAAACAUAAACAAAUAUUUAUGCGCCUAUUAAUGCCCAU----ACAGUCCCUGUCCUCAUA -----(((((((.((((((((.....)))))))).)))))))..........((((.((........)).)))----)................. ( -17.80) >DroAna_CAF1 41313 87 + 1 GACUAUAUGUUUGCAGAUUGAUAAGCGCGAUGUGAAAACAUAAACAAAUAUUUAUGCGCCUAUUUAUGCCCAUUCCCAG-----CUGUCCC-A-- (((...(((...(((....((((.(((((((((....)))).............))))).))))..))).)))......-----..)))..-.-- ( -14.11) >consensus _____UAUGUUUGCACAUUGAUAAGCUCGAUGUGAAAACAUAAACAAAUAUUUAUGCGCCUAUUAAUGCCCAU_CACACAGGCCCUGUCCCCAUC .....(((((((.((((((((.....)))))))).)))))))...........(((.((........)).)))...................... (-14.19 = -14.55 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:51 2006