Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 11,328,126 – 11,328,225 |
Length | 99 |
Max. P | 0.798903 |
Location | 11,328,126 – 11,328,225 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 82.11 |
Mean single sequence MFE | -25.48 |
Consensus MFE | -13.02 |
Energy contribution | -13.05 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.05 |
Mean z-score | -3.12 |
Structure conservation index | 0.51 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.798903 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11328126 99 - 23771897 -------G-CUGCUGUCGCUGUUUGCUCAAUUAAUACGAACUUUAAUUGAAAAACAAUACAAUUAACUAAAUCAGUUAAGCGCGUCGGUCGCCUCGAGUCUGCGAGU -------(-(.((((.((((((((..((((((((........)))))))).)))))......((((((.....))))))..))).)))).))((((......)))). ( -28.40) >DroPse_CAF1 60163 81 - 1 -------G-CUGCU---GUUGUUUGCUCAAUUAAUACGAACUUUAAUUGAAAAACAAUACAAUUAACUAAAUCAGUUAAGCGCGUCG--CGACG------------- -------(-(.(((---(((((((..((((((((........)))))))).))))))))...((((((.....))))))))))....--.....------------- ( -19.10) >DroGri_CAF1 38693 101 - 1 CCAGUUGGUUUGUUAUGUUUGUUUGCUCAAUUAAAACGAACUUUAAUUGAAAAACAAUGCAAUUAACUAAAUCAGCUAAGCGCGUCGCUGGCGUCGCUUUU------ ..((((((((((((((((((((((..(((((((((......))))))))).)))))).)))..)))).)))))))))((((((((.....))).)))))..------ ( -32.50) >DroSec_CAF1 48784 93 - 1 -------G-CUGCCGUCGCUGUUUGCUCAAUUAAUACGAACUUUAAUUGAAAAACAAUACAAUUAACUAAAUCAGUUAAGCGCGUCGGUCGCCUCGAGUCU------ -------(-(.((((.((((((((..((((((((........)))))))).)))))......((((((.....))))))..))).)))).)).........------ ( -26.90) >DroSim_CAF1 55954 93 - 1 -------G-CUGCCGUCGCUGUUUGCUCAAUUAAUACGAACUUUAAUUGAAAAACAAUACAAUUAACUAAAUCAGUUAAGCGCGUCGGUCGCCCCGAGUCU------ -------(-(.((((.((((((((..((((((((........)))))))).)))))......((((((.....))))))..))).)))).)).........------ ( -26.90) >DroPer_CAF1 60472 81 - 1 -------G-CUGCU---GUUGUUUGCUCAAUUAAUACGAACUUUAAUUGAAAAACAAUACAAUUAACUAAAUCAGUUAAGCGCGUCG--CGACG------------- -------(-(.(((---(((((((..((((((((........)))))))).))))))))...((((((.....))))))))))....--.....------------- ( -19.10) >consensus _______G_CUGCUGUCGCUGUUUGCUCAAUUAAUACGAACUUUAAUUGAAAAACAAUACAAUUAACUAAAUCAGUUAAGCGCGUCGGUCGCCUCGAGUCU______ ...........((......(((((..((((((((........)))))))).)))))......((((((.....))))))..))........................ (-13.02 = -13.05 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:50 2006