Locus 3911

Sequence ID 3L_DroMel_CAF1
Location 11,326,310 – 11,326,418
Length 108
Max. P 0.528567
window6090

overview

Window 0

Location 11,326,310 – 11,326,418
Length 108
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 79.62
Mean single sequence MFE -23.66
Consensus MFE -16.74
Energy contribution -17.34
Covariance contribution 0.60
Combinations/Pair 1.30
Mean z-score -1.45
Structure conservation index 0.71
SVM decision value -0.01
SVM RNA-class probability 0.528567
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11326310 108 + 23771897
GCCAUUGUUGUGGCUU-UUGACAACUUUCAAGUUUGUUCCAAGGCCAAAAAGCGGUAGCUCUGGAAAACCAUUGUUUU-ACAAUUAUUUUUCACUGCAUUU----UUACGAUCA
...((((((.((((((-(.(((((((....)).)))))..)))))))...)))))).((..(((((((..((((....-.))))..)))))))..))....----......... ( -25.30)
>DroSec_CAF1 47011 108 + 1
GCCAUUGUUGUGGCUU-UUGACAACUUUCAAGUUUGUUUCAAGGCCAAAAAGCGGGAGCUCUGGAAAACCAUUGUUUU-ACAAUUAUUUUUCACUGCACUU----UUACGAUCA
.((...(((.((((((-(.(((((((....)).)))))..)))))))...))).)).((..(((((((..((((....-.))))..)))))))..))....----......... ( -25.00)
>DroEre_CAF1 51086 108 + 1
GCCAUUGUAGUGGCUU-UUAACAACUUUCAAGUUUGUCCCAAGGCCAAGAAGCGCGAGCUCUGAAAAACCAUUGUUUU-ACAAUUAGUUUUCACUGCAGUU----UUACGAUUA
...(((((((((((((-(..((((((....)).))))...)))))).(((.((....)))))(((((...((((....-.))))...))))))))))))).----......... ( -26.70)
>DroYak_CAF1 39254 109 + 1
GUCAUUGUGCUGGCUU-UUAACAACUUUCAAGUUUGUUCCAAGGCCACAAAGCCCGAGCUCUGGAAAACCAUUGUUUUCACAAUUAUUUUUCACUGCAGUU----UUACGAUUA
(((.(((.((((((((-(.(((((((....)).)))))..))))))....))).)))((..(((((((..(((((....)))))..)))))))..))....----....))).. ( -23.20)
>DroAna_CAF1 39284 99 + 1
GCCAUUGUUGUGGUUUUUUGACAACUUUCAAGUUUAUUCCAAGGCCC--------------AGGGAAACAAUUGUGGA-GUAACUAUAUUUUUCUUAACUUAUUGUAACAAUAA
...(((((((..((..(((((......))))).((((((((......--------------..(....).....))))-))))..................))..))))))).. ( -18.12)
>consensus
GCCAUUGUUGUGGCUU_UUGACAACUUUCAAGUUUGUUCCAAGGCCAAAAAGCGCGAGCUCUGGAAAACCAUUGUUUU_ACAAUUAUUUUUCACUGCACUU____UUACGAUCA
...(((((((((((((...(((((((....)).)))))...))))))..........((..(((((((..((((......))))..)))))))..))........))))))).. (-16.74 = -17.34 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:49 2006