Locus 3908

Sequence ID 3L_DroMel_CAF1
Location 11,324,143 – 11,324,241
Length 98
Max. P 0.717406
window6085

overview

Window 5

Location 11,324,143 – 11,324,241
Length 98
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 93.06
Mean single sequence MFE -19.33
Consensus MFE -17.56
Energy contribution -17.62
Covariance contribution 0.06
Combinations/Pair 1.11
Mean z-score -1.22
Structure conservation index 0.91
SVM decision value 0.39
SVM RNA-class probability 0.717406
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11324143 98 + 23771897
CCUUAGUUUUAUGUCAACUGCACGAGUGCGAUCCUCAUUUGGCGCAUUUGCUAUUCGACUUUGCCUCUGCACAUUACUUUUAAUCACUCAUCAUAUUG
....(((...((((.....(((.(((.((((...((...(((((....)))))...))..)))))))))))))).))).................... ( -16.10)
>DroSec_CAF1 44796 98 + 1
CCUUAGUUUUAUGUCAGCUGCACGAGUGCGAUCCUCGUUUGGCGCAUUUGCUAUUCGACUUUGCCUCUGCACAUUACUUUUAAUCACUCAUCAUAUUG
................(.((((.(((.((((...(((..(((((....)))))..)))..)))))))))))).......................... ( -20.60)
>DroSim_CAF1 51899 98 + 1
CCUUAGUUUUAUGUCAGCUGCACGAGUGCGAUCCUCGUUUGGCGCAUUUGCUAUUCGACUUUGCCUCUGCACAUUACUUUUAAUCACUCAUCAUAUUG
................(.((((.(((.((((...(((..(((((....)))))..)))..)))))))))))).......................... ( -20.60)
>DroEre_CAF1 48900 98 + 1
CUUUAGUUGUAUGUCAGCUGCACGAGUGCGAUCCUCGUUUGGCGCAUUUGCUAUUCGACUUUGCCUUUGCACAUUACUUUUAAUCACUCAUCAUAUUG
....(((((.....)))))(((.(((.((((...(((..(((((....)))))..)))..))))))))))............................ ( -20.90)
>DroYak_CAF1 37095 98 + 1
CUUUAGUUUUUUGUCAGCUGCACGAGUGCGAUCCUCGUUUGGCGCAUUUGCUAUUCGACUUUGCCUCUGCACAUUACUUUUAAUCACUCAUCAUAUUG
................(.((((.(((.((((...(((..(((((....)))))..)))..)))))))))))).......................... ( -20.60)
>DroAna_CAF1 37170 98 + 1
CUCUUCCCUGACUGGUGUUGCACGAGUGUGAUCCUCAUUUGGCGCAUUUGCUAUUCGACUUUGCCUCUGCACAUUACUUUUAAUCACUCAUCAUAUUG
............((((((.(((.(((.(..(...((...(((((....)))))...))..)..)))))))))))))...................... ( -17.20)
>consensus
CCUUAGUUUUAUGUCAGCUGCACGAGUGCGAUCCUCGUUUGGCGCAUUUGCUAUUCGACUUUGCCUCUGCACAUUACUUUUAAUCACUCAUCAUAUUG
..................((((.(((.((((...(((..(((((....)))))..)))..)))))))))))........................... (-17.56 = -17.62 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:44 2006