| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,314,906 – 11,315,002 |
| Length | 96 |
| Max. P | 0.942735 |
| Location | 11,314,906 – 11,315,002 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 70.58 |
| Mean single sequence MFE | -33.07 |
| Consensus MFE | -12.97 |
| Energy contribution | -14.39 |
| Covariance contribution | 1.42 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.39 |
| SVM decision value | 1.33 |
| SVM RNA-class probability | 0.942735 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11314906 96 + 23771897 GAUAAUUGCGGUGCU------GGUUCUUAUUCUGUCCGGGGAUACGGAAUCUGGGAGCUGGGAGCUGGGA-ACUGGGUUCUCGGAUC--------------CGGGGUCCGGGAAGCC .....((.((((.(.------.(((((((.....((((......))))...)))))))..)..)))).))-...((.(((((((((.--------------....))))))))).)) ( -38.90) >DroSec_CAF1 35778 82 + 1 GAUAAUUGCGGUUCU------GGUUCUUAUUCUGUCCGGGAAUACGGAAUCUGGGAACAGG-------GA--------UCUGGGAUC--------------CGGGGUCCGGGAAGUC .....((.(((((((------((.(((((.(((.((((......))))..(((....))))-------))--------..))))).)--------------))))).))).)).... ( -27.90) >DroSim_CAF1 40296 89 + 1 GAUAAUUGCGGUUCU------GGUUCUUAUUCUGUCCGGGGAUACGGAAUCUGGGAACUGG-------GA-ACUGGGUUCUGGGAUC--------------CGGGGUCCGGGAAGUC ...........(((.------.(((((((.....((((......))))...)))))))..)-------))-.(((((..((((...)--------------)))..)))))...... ( -32.40) >DroEre_CAF1 39588 109 + 1 GAUAAUUGCGGUUCUGGUUCUGGUUCUUAUUCUGUCCGGGAAUAGGGAAUCUGGGAACUGG-------GA-ACUGGGAUCUGGGUUGUGGAAACUUGGGUCCGGGGUCCGGGAAGUC .....((.((((((..(((((((((((((((((.....)))))).))))))..)))))..)-------))-.((.(((((..((((.....))))..))))).))..))).)).... ( -42.10) >DroYak_CAF1 27323 92 + 1 GAUAAUUGCGGUUCU------GGUUCUUAUUCUGUCCGGGAAUACAGAAUCUGGAAACUGG-------GAAACUGGGAUCUCGGAUCUG------------UGGGGUCCAGGAAGUC .......((..((((------((..(((((...((((((((...(((...)))....(..(-------....)..)..))))))))..)------------))))..)))))).)). ( -31.50) >DroPer_CAF1 46405 74 + 1 GAUAAUUGCGGUUCU------GGCCCG------GUCUCGGGA--CCGGGUCUGGA--UUUG-------GA-UGUGGA-UGU-GGAUG--------------UGGAUUGGGAGCU--- .........((((((------((((((------(((....))--)))))))..((--(..(-------.(-(.(...-...-).)).--------------)..))).))))))--- ( -25.60) >consensus GAUAAUUGCGGUUCU______GGUUCUUAUUCUGUCCGGGAAUACGGAAUCUGGGAACUGG_______GA_ACUGGG_UCUGGGAUC______________CGGGGUCCGGGAAGUC ........(((((((......((((((((((((.....)))))).))))))..)))))))..................(((.((((...................)))).))).... (-12.97 = -14.39 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:39 2006