Locus 3904

Sequence ID 3L_DroMel_CAF1
Location 11,313,761 – 11,313,856
Length 95
Max. P 0.781947
window6079

overview

Window 9

Location 11,313,761 – 11,313,856
Length 95
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 95.54
Mean single sequence MFE -25.96
Consensus MFE -23.02
Energy contribution -23.02
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.35
Structure conservation index 0.89
SVM decision value 0.56
SVM RNA-class probability 0.781947
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11313761 95 + 23771897
UAGGUUAGUGGAGAUUGCAAGUGGAUUGG----ACCAUUGGAGUGGCGCUUUUCCGCAGAGUUUGCAGUUUGGAUUUCCAUUCAGGUCUUGUUCUAUUA
.....((((((((((((((((((((..((----.((((....))))..))..))))).....))))))))(((....)))............))))))) ( -24.90)
>DroSec_CAF1 34604 91 + 1
----UUAGUGGAGAUUGCAAGUGGAUUGG----ACCAUUGGAGUGGCGCUUUUCCGCAGAGUUUGCAGUUUGGAUUUCCAUUCAGGUCUUGUUCUAUUA
----.((((((((((((((((((((..((----.((((....))))..))..))))).....))))))))(((....)))............))))))) ( -24.90)
>DroSim_CAF1 39122 91 + 1
----UUAGUGGAGAUUGCAAGUGGAUUGG----ACCAUUGGAGUGGCGCUUUUCCGCAGAGUUUGCAGUUUGGAUUUCCAUUCAGGUCUUGUUCUAUUA
----.((((((((((((((((((((..((----.((((....))))..))..))))).....))))))))(((....)))............))))))) ( -24.90)
>DroEre_CAF1 38370 91 + 1
----UUAGUGGAGAUUGCAAGUGGAUUGG----CCCAUUGGAGUGGCGCUUUUCCGCAGAGUUUGCAGUUUGGAUUUCCAUUCAGGUCUUGUUCUAUUA
----.((((((((((((((((((((..((----(((((....)))).)))..))))).....))))))))(((....)))............))))))) ( -29.40)
>DroYak_CAF1 26186 95 + 1
----UUAGUGGAGAUUGCAAGUGGAUUGGAGAUCCCAUUGGAGUGGCGCUUUUCCGCAGAGUUUGCAGUUUGGAUUUCCAUUCAGGUCUUAUUCUAUUA
----.(((..((((((.......((.(((((((((....((((........))))((((...)))).....))))))))).)).))))))...)))... ( -25.70)
>consensus
____UUAGUGGAGAUUGCAAGUGGAUUGG____ACCAUUGGAGUGGCGCUUUUCCGCAGAGUUUGCAGUUUGGAUUUCCAUUCAGGUCUUGUUCUAUUA
.....((((((((((((((((((((..((.....((((....))))..))..))))).....))))))))(((....)))............))))))) (-23.02 = -23.02 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:38 2006