Locus 3901

Sequence ID 3L_DroMel_CAF1
Location 11,299,355 – 11,299,454
Length 99
Max. P 0.694658
window6074

overview

Window 4

Location 11,299,355 – 11,299,454
Length 99
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 86.96
Mean single sequence MFE -23.66
Consensus MFE -17.42
Energy contribution -17.82
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.80
Structure conservation index 0.74
SVM decision value 0.34
SVM RNA-class probability 0.694658
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11299355 99 + 23771897
UUUACUUUAUUUUUUUUUUUUGGGUCAACU--UACUUGAGACUUACCCA--UGUGCAAAGUGCAUCUGAAGUCUCGUAAGUCUGGCCACUUUGGUACCCUGCA
.....................(((((((((--(((..(((((((...((--.((((.....)))).))))))))))))))).))(((.....))))))).... ( -26.20)
>DroSec_CAF1 23464 95 + 1
UUUACUUUAUCU------UUUGGGUCAACA--UACUUGAGACUUACCUAUAUGUGCAAAGUGCAUCUGAAGUCUCGUAAGUCUGGCCACUUUGGUACCCUGCA
.......((((.------....(((((((.--(((..(((((((......(((..(...)..)))...)))))))))).)).))))).....))))....... ( -22.30)
>DroSim_CAF1 27723 93 + 1
UUUACUUUAUUU------UUUGGGUCAACA--UACUUGAGACUUACCUA--UGUGCAAAGUGCAUCUGAAGUCUCGUAAGUCUGGCCACUUUGGUACCCUGCA
............------...((((...((--.(((((((((((....(--((..(...)..)))...)))))))..)))).))(((.....))))))).... ( -23.40)
>DroEre_CAF1 27020 89 + 1
UUUACUUU--CU------UUUGGGUCAACACACACUUCAGACUU----A--UGUGCAAAGUGCAUCUGCAGUCUCGUAAGUCUGGCCGUCUUGGUACCCUGCA
........--..------...((((............(((((((----(--((.(...(.(((....))).)).))))))))))(((.....))))))).... ( -23.10)
>DroYak_CAF1 14535 93 + 1
UUUACUUU--CU------UUUGGGUCAACAAACACUUGAGACUUUGCCG--UGUGCAAAGUGCAUCUGAAGUCUCGUAAGUCUGGCCGCCUUGGUACCCUGCA
........--..------...((((...((.((...(((((((((...(--((..(...)..)))..)))))))))...)).))(((.....))))))).... ( -23.30)
>consensus
UUUACUUUAUCU______UUUGGGUCAACA__UACUUGAGACUUACCCA__UGUGCAAAGUGCAUCUGAAGUCUCGUAAGUCUGGCCACUUUGGUACCCUGCA
.....................((((........(((((((((((........((((.....))))...)))))))..))))...(((.....))))))).... (-17.42 = -17.82 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:34 2006