Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 11,295,478 – 11,295,596 |
Length | 118 |
Max. P | 0.568901 |
Location | 11,295,478 – 11,295,596 |
---|---|
Length | 118 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.02 |
Mean single sequence MFE | -33.42 |
Consensus MFE | -24.17 |
Energy contribution | -23.87 |
Covariance contribution | -0.30 |
Combinations/Pair | 1.39 |
Mean z-score | -1.40 |
Structure conservation index | 0.72 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.568901 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11295478 118 + 23771897 AGAUUUUCAGGAUCGGAGAGUCCGGCGAUCAUUCGCAUCUGACCAAGAUUCAGUUCAGUGGGCUCAUAUCUUAAAGUUCCAUUACGGCCCACUGUUAGAAAAUUUGUGUGAAAAGAUU-- ((((((((.(((((...(.(((..((((....))))....))))..)))))....(((((((((.....................)))))))))...)))))))).............-- ( -32.60) >DroSec_CAF1 19450 118 + 1 AGAUUUUCAGGAUCGGAGAGUCCGGCGAUCCUUCGCAUCUGACCAAGAUUCAGUUUAGUGGGCUCAUAUCUUAAAGUUCCAUUGCGGCCCACUGUUAGAAAAUUCGUGUGAAACGAUU-- ..((((((.(((((...(.(((..((((....))))....))))..)))))....(((((((((((................)).)))))))))...))))))((((.....))))..-- ( -33.19) >DroSim_CAF1 23331 118 + 1 AGAUUUUCAGGAUCGGAGAGUCCGGCGAUCCUUCGCAUCUGACCAAGAUUCAACUUAGUGGGCUCAUAUCUUAAAGUUCCAUUGCGGCCCACUGUUAGAAAAUUCGUAUGAAAAGAUU-- .(((((((.(((((...(.(((..((((....))))....))))..)))))....(((((((((((................)).)))))))))...)))))))..............-- ( -31.29) >DroEre_CAF1 22790 118 + 1 AGAUUUUCAGAGUCAGAGAGUCCGGCGAGAAAUCGCAUCUGACCGAGAUCCAGUUCAGUGGGCUCAUAUCUUAGCGUUCCAUUGCGGCCCACUGCUCGAAAAUUCGUGUGAAAAGAUU-- ...((((((.(((((((.......((((....)))).))))))((((.....(..(((((((((.........(((......))))))))))))..).....))))).))))))....-- ( -37.90) >DroYak_CAF1 10084 118 + 1 AGAUUUUCUGAAUCAGAGAGUCCGGCGAGAAAUCGCAUCUGGCCAAGAUCCAGUUCAGUGGGCUCGUAUCUUAACGUUCCAUUGCGGCCCACUGUUAGAAAAUUCGUAUGAAAAGAUU-- .(((((((((...)))))))))((((((....)))).((((((...((......))(((((((.((((..............))))))))))))))))).....))............-- ( -37.54) >DroAna_CAF1 9890 116 + 1 AGGUCUCCAACGUCAUAGAGAUCGGAAAUCAGUUGCAUCUGUUCUAGGGUCAAUUCCUUGGGCUCAUAUCUCAAAGUACCAUUACGGCCCACUGUACGGACAUCCCUG----ACGAUCCC .((((((..........))))))(((..((((..(..(((((.(..(((((......(((((.......))))).(((....))))))))...).)))))..)..)))----)...))). ( -28.00) >consensus AGAUUUUCAGGAUCAGAGAGUCCGGCGAUCAUUCGCAUCUGACCAAGAUUCAGUUCAGUGGGCUCAUAUCUUAAAGUUCCAUUGCGGCCCACUGUUAGAAAAUUCGUGUGAAAAGAUU__ .(((((((.(.(((...(.(((..((((....))))....))))..))).)....(((((((((.....................)))))))))...)))))))................ (-24.17 = -23.87 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:33 2006