| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 155,972 – 156,090 |
| Length | 118 |
| Max. P | 0.512974 |
| Location | 155,972 – 156,090 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 81.03 |
| Mean single sequence MFE | -44.72 |
| Consensus MFE | -27.33 |
| Energy contribution | -27.87 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.61 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.512974 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 155972 118 - 23771897 GUUGGCCAGCGAUGAACGGUUCGAGCUGGAAAAGCUCAGGGAGAGGCUGUCGCUGGUCAGCAGUGAGGAGGCGGAACUGCUUGGCGUCAUCUGUGACAUUUGCUGCUGGAGCUGGUUG ((((((((((((((..(..((((((((.....))))).)))...)..)))))))))))(((((..((.(((((....)))))...((((....)))).))..)))))..)))...... ( -46.40) >DroPse_CAF1 50707 109 - 1 GUUGGCCAGCGAGGAGCGGUUCGAGCUGGAGAAGCUGAGGGACAGGCUGUCGCUGGUCAGCAGGGAGGAGGCCGAGCUGCUCGGCGUCAUCU---------GCUGCUGCAGAAGGCUG ((((((((((((.(.((.((((.((((.....))))...))))..))).)))))))))))).........((((((...))))))(((.(((---------((....))))).))).. ( -53.30) >DroEre_CAF1 39157 118 - 1 GUUGGCUAGCGAGGAACGGUUCGACCCGGAUAAGCUCAGGGAGAGGCUGUCGCUGGUCAGCAGUGAGGAGGCGGAGCUGCUUGGCGUCAUCUGUGACAUUUGCAGCUGGAGAUGGCUG ((((((((((((....((((((..(((.((.....)).))).)).)))))))))))))))).((.(((.(((...))).))).))(((((((.(..(.......)..).))))))).. ( -42.60) >DroYak_CAF1 36928 118 - 1 GUUGGCCAGUGAGGAACGGUUUGAGCUGGAUAAACUCAGGGAAAGGCUGUCGCUGGUCAGCAGUGAGGAGGCGGAGCUGCUGGGCGUCAUCUGUGACAUUUGCUGCUGGAGAUGGCUG ((((((((((((....((((((...((((......))))....))))))))))))))))))(((.(...(((((.(((....)))((((....)))).....))))).....).))). ( -40.70) >DroAna_CAF1 39948 111 - 1 AUUGGCCAGUGAAGAGCGAUUGGAACUGGAAAAGCUCAAUGAGAGACUAUCGCUGGUCAGCAACGAUGAGGAGGAGCUGCUGGGUGUCAUGUGGGAGAUCGGCUGCUG---CUG---- .(((((((((((.((((................))))..(....)....)))))))))))...........((.(((.(((((.(.((......)).)))))).))).---)).---- ( -33.69) >DroPer_CAF1 50881 109 - 1 AUUGGCCAGCGAGGAGCGGUUCGAGCUGGAGAAGCUGAGGGACAGGCUGUCGCUGGUCAGCAGGGAGGAGGCCGAGCUGCUCGGCGUCAUCU---------GCUGCUGCAGAAGGCUG ...(((((((((.(.((.((((.((((.....))))...))))..))).)))))))))((((((...((.((((((...)))))).)).)))---------)))(((......))).. ( -51.60) >consensus GUUGGCCAGCGAGGAACGGUUCGAGCUGGAAAAGCUCAGGGAGAGGCUGUCGCUGGUCAGCAGUGAGGAGGCGGAGCUGCUCGGCGUCAUCUGUGACAUUUGCUGCUGGAGAUGGCUG ((((((((((((....((((....))))......(((.....)))....))))))))))))......((.((.(((...))).)).))................(((......))).. (-27.33 = -27.87 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:30 2006