Locus 3899

Sequence ID 3L_DroMel_CAF1
Location 11,286,785 – 11,286,890
Length 105
Max. P 0.583766
window6072

overview

Window 2

Location 11,286,785 – 11,286,890
Length 105
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 81.52
Mean single sequence MFE -41.72
Consensus MFE -28.80
Energy contribution -28.87
Covariance contribution 0.06
Combinations/Pair 1.38
Mean z-score -1.44
Structure conservation index 0.69
SVM decision value 0.10
SVM RNA-class probability 0.583766
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11286785 105 + 23771897
AUUUAGCUCCGAUGAUUUCGACUGGGGUCAGAUGGGUGCUGGUCUGAAUGAUGAGCAGUUGGCUGCCUUUGUGGCCCAUCAACUGGCCCAUUGGCAACUGUGGCA
.....(((.(((.....)))((.(..(((((.((((((((.(((.....))).)))((((((..(((.....)))...)))))).))))))))))..).))))). ( -37.00)
>DroSec_CAF1 10999 105 + 1
UUUCAGCUCCGAUGAUUUCGACUGGGGUCAGAUGGGUGCUGGUCUGAAUGACGAGCAGUUGGCCGCCUUUGUGGCCCAUCAGUUGGCCCAUUGGAAACUGUGGCA
...(((((....((((..(....)..))))(((((.((((.(((.....))).))))....(((((....)))))))))))))))(((.((.(....).))))). ( -40.80)
>DroSim_CAF1 13791 105 + 1
UUUCAGUUCCGAUGAUUUCGACUGGGGUCAGAUGGGUGCUGGUCUGAAUGACGAGCAGUUGGCCGCCUUUGUGGCCCAUCAGCUGGCCCAUUGGAAACUGUGGCA
...(((((((((((....).....(((((((.(((.((((.(((.....))).))))...((((((....))))))..))).)))))))))))).)))))..... ( -42.80)
>DroEre_CAF1 11311 105 + 1
CUUUAGGUCCGAUGACUUCGACUGGGGCCAGAUGGGUGCUGGUCUGAAUGACGAGCAGCUGGCGGCCUUUGUGGCCCAUCAACUGGCCCACUGGCGUCUGUGGCA
......(.(((..(((.(((....(((((((..((.((((.(((.....))).)))).)).(.((((.....))))).....)))))))..))).)))..)))). ( -43.20)
>DroYak_CAF1 1032 105 + 1
UUUUGCCUCCGAUGACUUCGACUGGGGUCAGAUGGGUGCUGGCCUGAAUGACGAGCAGUUGGCCGCCUUUGUGGCCCAUCAACUGGCCCAUUGGCGUCUGUGGCA
...((((.(.((((.((.......(((((((.(((.((((.(.(.....).).))))...((((((....))))))..))).)))))))...)))))).).)))) ( -40.20)
>DroAna_CAF1 974 105 + 1
CCUGGCCGUGGACGAUCUGCCGUCCACCCAAGUGGGCUCCGGACUUAAGGAAGUGGAGAUGGCGGCUUUUGUGGCCCACCAGCUGGCCCACUGGAAGAAGCGGCA
....((((((((((......)))))))(((.(((((((((........)))(((((....(((.((....)).)))..))).)).))))))))).......))). ( -46.30)
>consensus
UUUUAGCUCCGAUGAUUUCGACUGGGGUCAGAUGGGUGCUGGUCUGAAUGACGAGCAGUUGGCCGCCUUUGUGGCCCAUCAACUGGCCCAUUGGAAACUGUGGCA
...(((...(((.....))).)))(((((((.(((.((((.(((.....))).))))...((((((....))))))..))).)))))))................ (-28.80 = -28.87 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:31 2006