Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 11,286,415 – 11,286,523 |
Length | 108 |
Max. P | 0.518186 |
Location | 11,286,415 – 11,286,523 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 77.01 |
Mean single sequence MFE | -25.82 |
Consensus MFE | -13.66 |
Energy contribution | -13.26 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.22 |
Mean z-score | -1.74 |
Structure conservation index | 0.53 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.518186 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11286415 108 + 23771897 UUCGAAAAAUAUACAUUCUUA-----------AAUUCGAUUUUCCUCAGGUUGCCGUCAUUCCGCUGACUGCGAUUUUCAUGGCUAUUCAUAUGUUAAGCGAGUGGUAUUUCACACUAU ...(..((((((.(((((...-----------...............(((((((.((((......)))).))))))).....(((...(....)...))))))))))))))..)..... ( -18.10) >DroSec_CAF1 10629 108 + 1 UUCGAAAAAUAUACAUUCUCG-----------AUUUCGAUUUUCCUCAGGUUGCCGUCAUUCCGCUGACUGCGAUUUUCAUGGCCAUUCAUAUGCUAAGUGAGUGGUAUUUCACACUAU ...((((......(((..(((-----------....)))........(((((((.((((......)))).)))))))..)))(((((((((.......))))))))).))))....... ( -24.70) >DroSim_CAF1 13410 119 + 1 UUCGAAAAAUAUACGUUCUUAGAUCGUAAUACUUUUGGAUUUUCCUCAGGUUGCCGUCAUUCCGCUGACUGCGAUUUUCAUGGCCAUUCAUAUGUUAAGUGAGUGGUAUUUCACACUAU ...((((......(((....((((((((..((((..((.....))..))))....((((......))))))))))))..)))(((((((((.......))))))))).))))....... ( -27.60) >DroEre_CAF1 10932 117 + 1 --AGUGUUCCAUACAUAGUUAUAUUGUACUACUUUUCAAACCUCCCCAGGUUGCAGUCAUUCCGCUGACUGCGAUCUUCAUGGUUAUUCAUGAGCUAACCGAAUGGUAUUUCACACUCU --(((((....((((.........)))).((((.(((..........((((((((((((......))))))))))))((((((....)))))).......))).))))....))))).. ( -30.90) >DroYak_CAF1 648 119 + 1 UAAAAAUACUAUACAUUGUUAUAUCGUAACACUGUACAAUUUUCCACAGGUUGCAGUCAUUCCGCUGACUGCGUUUUUCAUGGUUAUUCACGGGCUAACCAAGUGGUACUUCACACUGU ...........((((.((((((...)))))).)))).........((((...(((((((......)))))))........((((((.(.....).)))))).((((....)))).)))) ( -27.80) >consensus UUCGAAAAAUAUACAUUCUUA_AU_GUA__ACUUUUCGAUUUUCCUCAGGUUGCCGUCAUUCCGCUGACUGCGAUUUUCAUGGCUAUUCAUAUGCUAAGCGAGUGGUAUUUCACACUAU ...............................................(((((((.((((......)))).))))))).....(((((((...........)))))))............ (-13.66 = -13.26 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:30 2006