Locus 3896

Sequence ID 3L_DroMel_CAF1
Location 11,282,773 – 11,282,875
Length 102
Max. P 0.983675
window6067

overview

Window 7

Location 11,282,773 – 11,282,875
Length 102
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 91.98
Mean single sequence MFE -26.85
Consensus MFE -22.82
Energy contribution -22.27
Covariance contribution -0.55
Combinations/Pair 1.26
Mean z-score -2.84
Structure conservation index 0.85
SVM decision value 1.95
SVM RNA-class probability 0.983675
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11282773 102 + 23771897
GUUUUACCUUGUGCGCAUGGAAAAUUGAGCAAUUUUCCGUCGUUUUUCACGUUCGUGCAGCAAGAGUGAAUUAUUAAUUUAAAAUCCCCCCUUAUCACGGAA
..((((((((((((((((((((((((....))))))))))(((.....)))...))))).)))).)))))..............(((...........))). ( -24.60)
>DroPse_CAF1 8744 98 + 1
UUUUCACUUUGCUCGCACGGAAAAUUGAGCAAUUUUCCAACGUUUUUCACGUUCGUGCGGC--GAGUGAAUUAUUAAUUUAAAAUCC--GCUUAUCACGAAA
..(((((((.((.(((((((((((((....))))))))(((((.....))))).)))))))--))))))).................--............. ( -29.40)
>DroSec_CAF1 7003 100 + 1
GUUUUACCUUGUGCGCAUGGAAAAUUGAGCAAUUUUCCGACGUUUUUCACGUUCGUGCAGCAAGAGUGAAUUAUUAAUUUAAAAUCC--CCUUAUCACGGAA
..((((((((((((((..((((((((....))))))))(((((.....))))).))))).)))).)))))..............(((--.........))). ( -26.50)
>DroSim_CAF1 9787 100 + 1
GUUUUACCUUGUGCGCAUGGAAAAUUGAGCAAUUUUCCGACGUUUUUCACGUUCGUGCAACAAGAGUGAAUUAUUAAUUUAAAAUCC--CCUUAUCACGGAA
..((((((((((((((..((((((((....))))))))(((((.....))))).)))).))))).)))))..............(((--.........))). ( -26.50)
>DroEre_CAF1 7236 100 + 1
GUUUUACCUUGUGCGCAUGGAAAAUUGAGCAAUUUUCCGACGUUUUUCAUGUUCGUGCAGCAAGAGUGAAUUAUUAAUUUAAAAUCC--CCUUAUCACGGAA
..((((((((((((((..((((((((....))))))))(((((.....))))).))))).)))).)))))..............(((--.........))). ( -24.70)
>DroPer_CAF1 8848 98 + 1
UUUUCACUUUGCUCGCACGGAAAAUUGAGCAAUUUUCCAACGUUUUUCACGUUCGUGCGGC--GAGUGAAUUAUUAAUUUAAAAUCC--GCUUAUCACGAAA
..(((((((.((.(((((((((((((....))))))))(((((.....))))).)))))))--))))))).................--............. ( -29.40)
>consensus
GUUUUACCUUGUGCGCAUGGAAAAUUGAGCAAUUUUCCGACGUUUUUCACGUUCGUGCAGCAAGAGUGAAUUAUUAAUUUAAAAUCC__CCUUAUCACGGAA
..((((((((((..((((((((((((....))))))))(((((.....))))).)))).))))).)))))................................ (-22.82 = -22.27 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:27 2006