Locus 3895

Sequence ID	3L_DroMel_CAF1
Location	11,278,939 – 11,279,054
Length	115
Max. P	0.694112

overview

Window 6

Location	11,278,939 – 11,279,054
Length	115
Sequences	4
Columns	115
Reading direction	reverse
Mean pairwise identity	90.72
Mean single sequence MFE	-23.57
Consensus MFE	-19.80
Energy contribution	-20.55
Covariance contribution	0.75
Combinations/Pair	1.00
Mean z-score	-1.58
Structure conservation index	0.84
SVM decision value	0.34
SVM RNA-class probability	0.694112
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11278939 115 - 23771897
UUAUCAGAUAAUCUUCAGUUUUUGAGGUGAUGUCAGCAGCGGGCUAUACAUUAACUUAAGAUAUAUAGAUUCUAUCAAUUCUUUGAAGUAUCUAUAAUAUUUUGAUUUUUAGUAG
..((((((...........(((((((.((((((.(((.....)))..)))))).)))))))..(((((((.((.((((....)))))).)))))))....))))))......... ( -23.60)
>DroSec_CAF1 3213 115 - 1
UAAUCAGAUAAUCUUCAGUUUUUGAGGUGAUGUCAGCCGCGGGCUAGACAUUAACUUAAGAUAUAUAGAUUAUAUCAAUUCUUUGAAGCAUCUAUAAUAUUUUGAUUUUUAACAG
.(((((((((((((.....(((((((.(((((((((((...)))).))))))).))))))).....))))))).((((....))))...............))))))........ ( -28.90)
>DroSim_CAF1 5467 115 - 1
UUAUCAGAUAAUCUUCAGUUUUUGAGGUGAUGUCAGCCGCGGGCUAUACAUUAACUUAAGAUAUAUAGAUUAUAUCAAUUCUUUGAAGCAUCUAUAAUUUUUUGAUUUUAAACAG
..((((((((((((.....(((((((.((((((.((((...))))..)))))).))))))).....))))))).((((....))))...............)))))......... ( -23.60)
>DroEre_CAF1 3403 113 - 1
UUAUCAGAUAAUCUUCCGUUUUCGAGGUGAUGUCAGCUGCCGGCUAUACAUUAGCUUUAGAU--AUAGAUUAUAUCAAUUCUUUGAAGCAUCUUUUAUAUUUUAAUUCUUACCAG
.......(((((((...((((..(((.((((((.(((.....)))..)))))).))).))))--..))))))).((((....))))............................. ( -18.20)
>consensus
UUAUCAGAUAAUCUUCAGUUUUUGAGGUGAUGUCAGCCGCGGGCUAUACAUUAACUUAAGAUAUAUAGAUUAUAUCAAUUCUUUGAAGCAUCUAUAAUAUUUUGAUUUUUAACAG
..((((((((((((.....(((((((.((((((.(((.....)))..)))))).))))))).....))))))).((((....))))...............)))))......... (-19.80 = -20.55 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:26 2006