Locus 3893

Sequence ID 3L_DroMel_CAF1
Location 11,276,463 – 11,276,583
Length 120
Max. P 0.648455
window6063

overview

Window 3

Location 11,276,463 – 11,276,583
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 96.62
Mean single sequence MFE -22.48
Consensus MFE -21.95
Energy contribution -22.20
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.54
Structure conservation index 0.98
SVM decision value 0.24
SVM RNA-class probability 0.648455
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11276463 120 + 23771897
CCGGGCAUUAUACCCCUUCCGCCGUUCCAUCAACCGUUUGAAUUGCAUCUGCAUAGCCCGAUAUUAUCCUCCCCUAAUGAUUUUGCGUUCCCCUAAUGGACACGCCUCACAACAUAGUUG
.(((((.......................((((....))))..(((....)))..)))))........................(((((((......))).))))............... ( -20.70)
>DroSec_CAF1 767 117 + 1
CCGGGCAUUAUACCACUUCC---GUUCCAUCAACCUUUUGAAUUGCAUCUGCAUAGCCCGAUAUUAUCCUCCCCUAAUGAUUUUGCGUUCCCCUAAUGGACACGCCUCACAUCAUAGUUG
.(((((..............---......((((....))))..(((....)))..)))))................(((((...(((((((......))).)))).....)))))..... ( -23.10)
>DroSim_CAF1 3035 117 + 1
CCGGGCAUUAUACCACUUCC---GUUCCAUCAACCUUUUGAAUUGCAUCUGCAUAGCCCGAUAUUAUCCUCCCCUAAUGAUUUUGCGUUCCCCUAAUGGACACGCCUCACAUCAUAGUUG
.(((((..............---......((((....))))..(((....)))..)))))................(((((...(((((((......))).)))).....)))))..... ( -23.10)
>DroEre_CAF1 795 117 + 1
GCGGGCAUUAUACCAUUUCC---GUUCCAUCAACCUUUUGAAUUGCAUCUGCAUAGCCCGAUAUUAUCCUCCCCUAAUGAUUUUGCGUUCCCCUAAUGGACACGCCUCACAUCAUAGUUG
.(((((..............---......((((....))))..(((....)))..)))))................(((((...(((((((......))).)))).....)))))..... ( -23.00)
>consensus
CCGGGCAUUAUACCACUUCC___GUUCCAUCAACCUUUUGAAUUGCAUCUGCAUAGCCCGAUAUUAUCCUCCCCUAAUGAUUUUGCGUUCCCCUAAUGGACACGCCUCACAUCAUAGUUG
.(((((.......................((((....))))..(((....)))..)))))................(((((...(((((((......))).)))).....)))))..... (-21.95 = -22.20 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:23 2006