Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 11,262,912 – 11,263,002 |
Length | 90 |
Max. P | 0.740375 |
Location | 11,262,912 – 11,263,002 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 67.41 |
Mean single sequence MFE | -23.07 |
Consensus MFE | -11.49 |
Energy contribution | -11.05 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.41 |
Mean z-score | -1.69 |
Structure conservation index | 0.50 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.740375 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11262912 90 - 23771897 CGGCGGACUGAGUGCCAAUCAUGUGGACGAAUAUGGUGUAUUCGGGGAAUACGUGGCCAUAACCAUACGCAAACUAAAGACGUCCAAGUC ..(((..((((((((..(((((((......))))))))))))))).......((((......)))).)))........(((......))) ( -23.70) >DroPse_CAF1 45826 87 - 1 ---CGGGCUUAGCGCCAACCAUGCGGAUGAGUACGGCGUAUUCGGGGAGUACGUGGCCAUCACAAUCCGCAAANNNNNNNNNNNNNNNNN ---..(((.....))).....(((((((((...(.((((((((...)))))))).)...)))...))))))................... ( -25.20) >DroSec_CAF1 1462 90 - 1 CGGCGGACUGAGUGCCAAUCAUGUGGACGAAUAUGGUGUAUUCGGGGAAUACGUGGCCAUAACCAUACGCAAACUAAAGACGUCCAAGUC ..(((..((((((((..(((((((......))))))))))))))).......((((......)))).)))........(((......))) ( -23.70) >DroWil_CAF1 80876 75 - 1 ---------------AAGCCAUAUAGAUGAAUAUGGUAUAUUUGGUGAAUAUGUGGCCAUUACCAUAAGGAAACUAAAGACAACCAAAUC ---------------..(((((((......)))))))..(((((((.....(((((......)))))((....)).......))))))). ( -19.70) >consensus ___CGGACUGAGUGCCAACCAUGUGGACGAAUAUGGUGUAUUCGGGGAAUACGUGGCCAUAACCAUACGCAAACUAAAGACGUCCAAGUC .............(((((((((((......)))))))((((((...)))))).))))................................. (-11.49 = -11.05 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:19 2006