Locus 3886

Sequence ID 3L_DroMel_CAF1
Location 11,256,598 – 11,256,710
Length 112
Max. P 0.729978
window6046

overview

Window 6

Location 11,256,598 – 11,256,710
Length 112
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 93.72
Mean single sequence MFE -23.71
Consensus MFE -19.52
Energy contribution -20.40
Covariance contribution 0.88
Combinations/Pair 1.07
Mean z-score -1.88
Structure conservation index 0.82
SVM decision value 0.42
SVM RNA-class probability 0.729978
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11256598 112 - 23771897
AAGCAAGUGUGGCAAUCUGUAUCAAUUUAAUUCGGUUAAAUUCGAUGUAGAAAGCUUUUAUGUUCGAACUCACGCAAAAUAUUGAUCUAAAAAUAAUUAAGCCGCGCAAAAA
......(((((((..((((((((((((((((...)))))))).))))))))....(((((.(.((((..............)))).))))))........)))))))..... ( -22.74)
>DroSec_CAF1 57616 111 - 1
AAGCAAGUGUGGCAAUCUGUAUCAAUUUAAUUCAGUUAAAUUCGAUGUGGAAAGCUUUUAUGUUUGAACUCACGCAAAAUAUUGAUCUAAAAAUCAUUAAACCGCGCAAA-U
......((((((...((..((((((((((((...)))))))).))))..)).........(((.((....)).)))...((.((((......)))).))..))))))...-. ( -22.20)
>DroSim_CAF1 59170 111 - 1
AAGCAAGUGUGGCAAUCUGUAUCAAUUUAAUUCGGUUAAAUUCGAUGUAGAAAGCUUUUAUGUUUGAACUCACGCAAAAUAUUGAUCUAAAAAUAAUUAAGCCGCGCAAA-U
......(((((((..((((((((((((((((...)))))))).)))))))).........(((.((....)).)))........................)))))))...-. ( -24.60)
>DroYak_CAF1 60880 111 - 1
AAGCAAGUGUGGCAAUCUGUAUCAAUUUAAUUCGGUUAAAUUCGUUGCAGUAAACUUUUAUAUUUGGACUCACGCAAAAUAUUGAUCUAAAAAUAAUUAAGCCGCGCAGA-U
......(((((((...(((((.(((((((((...)))))))).).))))).......((((.((((((.(((..........))))))))).))))....)))))))...-. ( -25.30)
>consensus
AAGCAAGUGUGGCAAUCUGUAUCAAUUUAAUUCGGUUAAAUUCGAUGUAGAAAGCUUUUAUGUUUGAACUCACGCAAAAUAUUGAUCUAAAAAUAAUUAAGCCGCGCAAA_U
......(((((((..((((((((((((((((...)))))))).)))))))).........(((.((....)).)))........................)))))))..... (-19.52 = -20.40 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:07 2006