| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,252,441 – 11,252,534 |
| Length | 93 |
| Max. P | 0.535950 |
| Location | 11,252,441 – 11,252,534 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 93.33 |
| Mean single sequence MFE | -27.90 |
| Consensus MFE | -25.20 |
| Energy contribution | -24.57 |
| Covariance contribution | -0.63 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.535950 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11252441 93 + 23771897 G--UGGCCCAGGUGUGUGUUUGUUGUGUGUGCGAGGAGUGUUUGCUUAUCUCGGCUGUGUGUCGUCCCCCAUAGGUG--UAUAUAUGAUAUAUACAC .--..((....))((((((.(((..((((((((((((((....))))..)))..(((((.(......).)))))..)--))))))..))).)))))) ( -25.50) >DroSec_CAF1 53293 93 + 1 G--UGGCCCAGGUGUGUGUUUGUUGUGUGUGCGAGGAGUGUUUGCUUAUCUCGGCUGUGUGUUGUCC-CCAUAGGUG-GCAUAUAUAAUAUAUACAC .--..((....))((((((.((((((((((((((.((((....)))).)).((.(((((.(......-)))))).))-)))))))))))).)))))) ( -29.60) >DroSim_CAF1 55031 93 + 1 G--UGGCCCAGGUGUGUGUUUGUUGUGUGUGCGAGGAGUGUUUGCUUAUCUCGGCUGUGUGUCGUCC-CCAUAGGUG-GCAUAUAUAAUAUAUACAC .--..((....))((((((.((((((((((((((.((((....)))).)).((.(((((.(......-)))))).))-)))))))))))).)))))) ( -29.60) >DroYak_CAF1 56691 93 + 1 GUGUGGCCCAGGUGUGUGUUUGUUGUGUGUGCGAGGAGUGUUUGCUUAUCUCGGCUGUGUGU---CC-CCAUAGGUGUAUAUAUAUAAUAUACACAC ...........(((((((((...((((((((((((((((....))))..)))..(((((...---..-.)))))..))))))))).))))))))).. ( -26.90) >consensus G__UGGCCCAGGUGUGUGUUUGUUGUGUGUGCGAGGAGUGUUUGCUUAUCUCGGCUGUGUGUCGUCC_CCAUAGGUG_GCAUAUAUAAUAUAUACAC .....((....))((((((.(((((((((((((((((((....))))..)))).(((((..........))))).....))))))))))).)))))) (-25.20 = -24.57 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:06 2006