Locus 3882

Sequence ID 3L_DroMel_CAF1
Location 11,246,007 – 11,246,122
Length 115
Max. P 0.891615
window6040

overview

Window 0

Location 11,246,007 – 11,246,122
Length 115
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.54
Mean single sequence MFE -24.02
Consensus MFE -19.78
Energy contribution -21.10
Covariance contribution 1.32
Combinations/Pair 1.06
Mean z-score -1.84
Structure conservation index 0.82
SVM decision value 0.97
SVM RNA-class probability 0.891615
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11246007 115 - 23771897
AGUGCAU----UAUGUGCACAUAUAUA-UAUAUGGCAAUUAUAUGAAAGUCAUUUGCUUUCAAAUAAUUAUGAACAAGGAAAAGAUUCACUCUGAAGUUCGGCUGACAUCAUCGCCUUAU
.((((((----...)))))).......-.....(((((((((.(((((((.....))))))).)))))).(((((..(((..........)))...)))))............))).... ( -25.70)
>DroSec_CAF1 47902 113 - 1
AGUGCAU----UAUGUGCACAUACA---UAUAUGGAAAUUAUAUGAAAGUCAUUUGCUUUCAAAUAAUUAUGAACAAGGAAAAGAUUCACUCUGAAGUUCAGCUGACAUCAUCGCCUUAU
.((((((----...)))))).....---........((((((.(((((((.....))))))).))))))......((((....((((((..(((.....))).))).)))....)))).. ( -24.70)
>DroSim_CAF1 49576 113 - 1
AGUGCAU----UAUGUGCACAUACA---UAUAUGGCAAUUAUAUGAAAGUCAUUUGCUUUCAAAUAAUUAUGAACAAGGAAAAGAUUCACUCUGAAGUUCAGCUGACAUCAUCGCCUCAU
.((((((----...)))))).....---.....(((((((((.(((((((.....))))))).)))))).(((((..(((..........)))...)))))............))).... ( -26.40)
>DroYak_CAF1 50822 107 - 1
AGUGCAU----A------ACAUACU---UAUAUGGCAAUUAUAUGAAAGUCAUUUGCUUUCAAAUAAUUAUGAACGAGGAAAAGAUUCACUCUGAAAUUCAGCUGACAUCAUCGCCCGAU
.......----.------.......---.....(((((((((.(((((((.....))))))).))))))..............((((((..(((.....))).))).)))...))).... ( -19.00)
>DroAna_CAF1 48477 120 - 1
ACUGCAUAUUAUAUGUGUUUUUUUAUAGUAUGAGGCAAUUAUAUGAAAGUCAUUUGCUUUCAAAUAAUUAUGAACAAGGAAAAGAUUCAUUCUGAAAUUGAGCUGACAUCAUCGCCCCCU
....(((((((((..........))))))))).(((((((((.(((((((.....))))))).))))))..............(((((((((.......))).))).)))...))).... ( -24.30)
>consensus
AGUGCAU____UAUGUGCACAUACA___UAUAUGGCAAUUAUAUGAAAGUCAUUUGCUUUCAAAUAAUUAUGAACAAGGAAAAGAUUCACUCUGAAGUUCAGCUGACAUCAUCGCCUCAU
.((((((.......)))))).............(((((((((.(((((((.....))))))).))))))..............((((((..(((.....))).))).)))...))).... (-19.78 = -21.10 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:02 2006