Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,124,110 – 1,124,219 |
Length | 109 |
Max. P | 0.986746 |
Location | 1,124,110 – 1,124,219 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 78.04 |
Mean single sequence MFE | -33.08 |
Consensus MFE | -19.77 |
Energy contribution | -19.71 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.38 |
Mean z-score | -2.58 |
Structure conservation index | 0.60 |
SVM decision value | 2.05 |
SVM RNA-class probability | 0.986746 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1124110 109 + 23771897 UUUUCACCCACGCAGUUCGGACAAUACAUAUGCACAUAUACACACAUAUGCGUAUCUGACAGUCGAGUGUGUGUGCCAUGUGGUGGUAUGGUAUUGUGUAAUCUGUGUG ........(((((((...(.(((((((.(((((.(((((.(((((((((.((...........)).)))))))))..)))))...)))))))))))).)...))))))) ( -38.10) >DroSec_CAF1 17634 102 + 1 U--UCACCCACGCAGUUCGGACAAUACAUAUGCAUACACAUAC-UAUAUGCGUAUCUGACAGUCGAGUGUGUGUGCCGUGUG---CGCUGGUAUUGUGU-AUCUGUGUG .--.....(((((((...(.(((((((...(((((((.(((((-.((((.((...........)).)))))))))..)))))---))...))))))).)-..))))))) ( -33.80) >DroSim_CAF1 14211 102 + 1 U--UCACCCACGCAGUUCGGACAAUACAUAUGCAUACACAUAC-UAUAUGCGUAUCUGACAGUCGAGUGUGUGUGCCGUGUG---CGAUGGUAUUGUGU-AUCUGUGUG .--.....(((((((...(.(((((((...(((((((.(((((-.((((.((...........)).)))))))))..)))))---))...))))))).)-..))))))) ( -33.80) >DroEre_CAF1 15374 82 + 1 U--UCACCCACGCAGCCCAACCAAUACACAUACAUACGCAU------------AUCUGACAGUCGAGUGUGCGU---GGGUG---CGUUGGUAUUGUGU-AUC------ .--......((((((....(((((..(((.....(((((((------------(..((.....))..)))))))---).)))---..))))).))))))-...------ ( -26.60) >consensus U__UCACCCACGCAGUUCGGACAAUACAUAUGCAUACACAUAC_UAUAUGCGUAUCUGACAGUCGAGUGUGUGUGCCGUGUG___CGAUGGUAUUGUGU_AUCUGUGUG .........(((((((((((......(((((((((((((((.........................))))))))).)))))).....)))).))))))).......... (-19.77 = -19.71 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:41 2006