| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,228,944 – 11,229,046 |
| Length | 102 |
| Max. P | 0.704459 |
| Location | 11,228,944 – 11,229,046 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 86.85 |
| Mean single sequence MFE | -28.88 |
| Consensus MFE | -22.00 |
| Energy contribution | -21.75 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.78 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.704459 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11228944 102 + 23771897 CG-GUCGACAACUCAUGAAUAUGUGAUACUGUUUAAGAUGCUAAGAGUUUUUUGCCGGAUGCAC----CAAAGU-----CCGGCAAAAGACGUUGAUAAAAUUACACAUAAC ..-((((((...((.((((((........)))))).))........((((((((((((((....----....))-----))))))))))))))))))............... ( -30.70) >DroVir_CAF1 38953 103 + 1 UC-GUCGACAACUCAUGAAUAUGUGAUACUGUUUAAGAUGCUAAGAGUUUUUUGCGUGC-GCUC----GCUAGUACGGCCAGGCAAAAAACGUUGAUAA-AU-ACACACA-C ..-((((((...((.((((((........)))))).))........(((((((((.((.-((.(----(......)))))).)))))))))))))))..-..-.......-. ( -26.10) >DroGri_CAF1 46312 109 + 1 UCAGUCGACAACUCAUGAAUAUGUGAUACUGUUUAAGAUGCUAAGAGUUUUUUGCGUGC-GCUCGCUCGCAAGUACGGCCAGGCAAAAAACGUUGAUAAAAU-ACACACA-C ...((((((...((.((((((........)))))).))........(((((((((.((.-((.((..(....)..)))))).))))))))))))))).....-.......-. ( -29.80) >DroSec_CAF1 37520 102 + 1 CG-GUCGACAACUCAUGAAUAUGUGAUACUGUUUAAGAUGCUAAGAGUUUUUUGCCGGAUGCAC----CAAAGU-----CCGGCAAAAGACGUUGAUAAAAUUACACAUAAU ..-((((((...((.((((((........)))))).))........((((((((((((((....----....))-----))))))))))))))))))............... ( -30.70) >DroEre_CAF1 39251 102 + 1 CG-GUCGACAACUCAUGAAUAUGUGAUACUGUUUAAGAUGCUAAGAGUUUUUUGCCGGAUGGAC----CAAAGU-----CUGGCAAAAGACGUUGAUAAAAUUACACAUAAC ..-((((((...((.((((((........)))))).))........((((((((((((((....----....))-----))))))))))))))))))............... ( -28.50) >DroYak_CAF1 40291 102 + 1 CG-GUCGACAACUCAUGAAUAUGUGAUACUGUUUAAGAUGCUAAGAGUUUUCUGCCGGAUGCAC----CAAAAU-----CCGGCAAAAGACGUUGAUAAAAUUACACAUAAC ..-((((((...((.((((((........)))))).))........(((((.((((((((....----....))-----)))))).)))))))))))............... ( -27.50) >consensus CG_GUCGACAACUCAUGAAUAUGUGAUACUGUUUAAGAUGCUAAGAGUUUUUUGCCGGAUGCAC____CAAAGU_____CCGGCAAAAGACGUUGAUAAAAUUACACAUAAC ...((((((...((.((((((........)))))).))........((((((((((((.....................))))))))))))))))))............... (-22.00 = -21.75 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:56 2006