Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 11,220,564 – 11,220,676 |
Length | 112 |
Max. P | 0.772102 |
Location | 11,220,564 – 11,220,676 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 87.84 |
Mean single sequence MFE | -31.88 |
Consensus MFE | -21.81 |
Energy contribution | -22.50 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.12 |
Mean z-score | -2.21 |
Structure conservation index | 0.68 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.772102 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11220564 112 - 23771897 ---UGUAUUGUUCAAAGGUUGAUAGAGCCUAUUCAUUUGGCGACCGCUGUUUGUGUGCAACUAUGUAUGUGGCAAGUUGGAUAGAUAGUCGCAUAUACAUAUAUCUUUGGAUACA ---.....(((((((((((.(((((.(((.........))).....)))))(((((((.(((((.(((.(((....))).))).))))).))))))).....))))))))))).. ( -31.00) >DroSim_CAF1 29532 107 - 1 ---UCUAUUGUUUAAACGC-GGUAGAGCCUAUUCAUUUGGCGCCCGCUGUUUGUGUGCAACUAUGUAUGUGGCAAGUUGGAUAGAUAGUCGCAUAU----AUAUCUUUGGAUACA ---..........((((((-((....(((.........)))..)))).))))((((.(((.((((((((((((..(((.....))).)))))))))----)))...))).)))). ( -30.60) >DroEre_CAF1 30769 107 - 1 ---UCUGUUGUUUAAAGAA-GUUAGUGCCUAUUCGUUUGGCGGCCGCUGUUUGUGUGCAACUAUGUAUGUGGCAAGUUGGAUAGAUAGUCACAUAU----AUAUCUUUGGAUACA ---.....((((((((((.-((..(((.(((((..((..((.(((((.......(((((....))))))))))..))..))..))))).)))....----)).)))))))))).. ( -30.41) >DroYak_CAF1 31527 110 - 1 ACUGCCAUUGUUUAAACAG-GGUAGCGCCUAUUUAUUUGGCGCCCGCUGUUUGUGUGCAACUAUGUAUGUGGCAAGUUGGAUAGAUAGUCACAUAU----AUAUCUUGGGAUACA ....(((((((.(((((((-((..(((((.........))))))).)))))))...)))).((((((((((((..(((.....))).)))))))))----)))...)))...... ( -35.50) >consensus ___UCUAUUGUUUAAACAA_GGUAGAGCCUAUUCAUUUGGCGCCCGCUGUUUGUGUGCAACUAUGUAUGUGGCAAGUUGGAUAGAUAGUCACAUAU____AUAUCUUUGGAUACA ........((((((((((...((((.(((.........)))((.(((.....))).))..))))(((((((((..(((.....))).))))))))).......)))))))))).. (-21.81 = -22.50 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:53 2006