Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 11,214,887 – 11,215,005 |
Length | 118 |
Max. P | 0.919055 |
Location | 11,214,887 – 11,215,005 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 85.06 |
Mean single sequence MFE | -26.08 |
Consensus MFE | -18.63 |
Energy contribution | -18.11 |
Covariance contribution | -0.52 |
Combinations/Pair | 1.12 |
Mean z-score | -2.38 |
Structure conservation index | 0.71 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.919055 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11214887 118 - 23771897 AUGCUAAUCUCUAUCUGACUUGCAUGUUUGCGUUUUUUGAAAAGUGAUACGAAACAUUGAUCCCAGAGAAAAAAAUGGAAUGGA-AACAUGCAACUCACGUCUGAUUAGGAAAUCAAAA .(.((((((...((.(((.((((((((((.((((....((..((((........))))..))(((..........))))))).)-))))))))).))).))..)))))).)........ ( -27.90) >DroSec_CAF1 23924 116 - 1 AUGCUAAUCUC--ACUGACUUGCAUGUUUGCGUUU-UUGAAAAAUGAUACGAAACAUUGAACCUAGAGAAAAAAAUCGAAUGGAAAACAUGCAACUCACUGCUGAUUAGGAAAUCAAAA .(.((((((.(--(.(((.((((((((((.(((..-((....))....)))..........((....((......))....)).)))))))))).))).))..)))))).)........ ( -25.50) >DroSim_CAF1 24098 116 - 1 AUGCUAAUCUC--ACUGACUUGCAUGUUUGCGUUU-UUGAAAAAUGAUACGAAACAUUGAACCUAGAGAAAAAAAUCGAAUGGAAAACAUGCAACUCACUGCUGAUUAGGAAAUCACAA .(.((((((.(--(.(((.((((((((((.(((..-((....))....)))..........((....((......))....)).)))))))))).))).))..)))))).)........ ( -25.50) >DroEre_CAF1 25354 109 - 1 AUAUUAAUCUC--CCUGACUUGCAUGUUUGCGAGU-UUGAGGAAUGAAACGAAACAUUGAACCUAGGGAA-------GAAUGGGAAACAUGCAACUCACUGCUGAUUAGGAAAUCAAAA ...((((((((--(((((((((((....)))))))-)..(((((((........))))...)))))))).-------.....(....)..(((......))).)))))).......... ( -24.70) >DroYak_CAF1 25655 107 - 1 GUUUUAAUCUG--CCUGACUUGCAUGUUUGCGAUU-UUGAAAAAUGAUACGAAACAUUGAAGC--AGAAA-------AAAUGUGAAACAUGCAACUCACUGCUGAUUAGGAAAUCAAAA .((((((((.(--(.(((.(((((((((((((.((-(((...((((........))))....)--)))).-------...))).)))))))))).)))..)).))))))))........ ( -26.80) >consensus AUGCUAAUCUC__ACUGACUUGCAUGUUUGCGUUU_UUGAAAAAUGAUACGAAACAUUGAACCUAGAGAAAAAAAU_GAAUGGAAAACAUGCAACUCACUGCUGAUUAGGAAAUCAAAA ...((((((......(((.((((((((((.............((((........))))...((..................)).)))))))))).))).....)))))).......... (-18.63 = -18.11 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:49 2006