| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,214,642 – 11,214,756 |
| Length | 114 |
| Max. P | 0.559159 |
| Location | 11,214,642 – 11,214,756 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 80.56 |
| Mean single sequence MFE | -25.82 |
| Consensus MFE | -12.84 |
| Energy contribution | -14.04 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.559159 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11214642 114 + 23771897 AUUUUUG-GGUAUUUAUUUAUUUAUAAGUACAUAUACAUAUAA-GACGGCAAUUAUGCUUAUCACCUUUUGGAAUGAUAAGUUCCUACUUCCGCAAGGAAACAAGAAACUGAGUCA .......-.((((((((......))))))))............-(((..((.....((((((((((....))..))))))))......((((....)))).........)).))). ( -25.10) >DroSec_CAF1 23672 112 + 1 AUUUUUG-GGUAUUGAUUUCUUUUUAAGUACUU--ACAUACAA-GACGAAAAGUAUGCUUAUCACCUUGUGGAAUGAUAAGUUCAUACUUCCGCAAGGAAACAAAAAACUGAGUCA .....((-((((((............)))))))--).......-(((((.(((....))).)).(((((((((((((.....))))...)))))))))..............))). ( -26.60) >DroSim_CAF1 23843 113 + 1 AUUUUUG-GGUAUUGAUUUCUUUUUAAGUUCUU-UUUAUACAA-GACGGAAAGUAUGCUUAUCACCUUUUUGAAUGAUAAGUUCAUACUUCCGCAAGGAAACAAGAAACUGAGUCA ...((..-(...(((.(((((((......((((-.......))-))(((((.((((((((((((..........)))))))..)))))))))).))))))))))....)..))... ( -23.10) >DroEre_CAF1 25102 113 + 1 AUUUUUG-GGUAUCGUUUUCUUUAUAAGUACUU--CUACUCAAAAACCAAAAGUAUGCUUAUCACCUAAUGGAAUUGAAAGUCCGCGCUUCCGCAAGGAAACUAUAAUUUGCGUAA .((((((-((((..((...((.....)).))..--.)))))))))).......(((((............(((........)))....((((....))))..........))))). ( -20.40) >DroYak_CAF1 25403 114 + 1 AUUUUUGGGGUAUUGAUUUCUUUAUAUGUACUC--AUAUUCAGGAAUCAGAAGUGUGCUUAUCACCUAAUGGAAUUUUAAGUGCACACUUCCGCAAGGAAACUGAAAACUGCGUCA .((((..(....(((((((((..(((((....)--))))..)))))))))..(((..((((...((....)).....))))..)))..((((....)))).)..))))........ ( -33.90) >consensus AUUUUUG_GGUAUUGAUUUCUUUAUAAGUACUU__AUAUACAA_GACGAAAAGUAUGCUUAUCACCUUAUGGAAUGAUAAGUUCAUACUUCCGCAAGGAAACAAAAAACUGAGUCA ............................................(((.....((((((((((((((....))..)))))))..)))))((((....))))............))). (-12.84 = -14.04 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:48 2006