Locus 3871

Sequence ID 3L_DroMel_CAF1
Location 11,211,169 – 11,211,266
Length 97
Max. P 0.997662
window6024

overview

Window 4

Location 11,211,169 – 11,211,266
Length 97
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 88.52
Mean single sequence MFE -17.93
Consensus MFE -16.70
Energy contribution -17.07
Covariance contribution 0.36
Combinations/Pair 1.04
Mean z-score -2.60
Structure conservation index 0.93
SVM decision value 2.90
SVM RNA-class probability 0.997662
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11211169 97 + 23771897
---CUUCUGCGCUUUAUUGUCGUGUAAUUAACUUUUUCCGAAUCGUCCGGAUUUGGAAUUGUUUGCACAUAAUUGCAAUUUAAUUAUUUUCUC------UC-GCUCG
---.......((...(((((.((((((...((...(((((((((.....)))))))))..))))))))))))).)).................------..-..... ( -20.90)
>DroPse_CAF1 23558 102 + 1
---CUUCUGCUCUUUAUUGUCGUGUAAUUAACUUUUUCCGAAUCGUCCGGAUUUGGAAUUGUUUGCACAUAAUUGCAAUUUAAUUAUUU-CUCUCUCUCUC-UCUCU
---....(((.....(((((.((((((...((...(((((((((.....)))))))))..))))))))))))).)))............-...........-..... ( -20.10)
>DroGri_CAF1 30408 98 + 1
---CUUCUGCUCUUUAUUGUCGUGUAAUUAACUUUUUCCGAAUC-UCCGGAUUUGGCAUUGUUUGCACAUAAUUGCAAUUUAAUUAUUUCUUC----U-UCUGCUCU
---....(((.....(((((.((((((...((.....(((((((-....)))))))....))))))))))))).)))................----.-........ ( -16.40)
>DroWil_CAF1 30459 101 + 1
---UUUCUGCUCUUUAUUGUCGUGUAAUUAACUUUUUCCGAAUC-UCCGGAUUUCGAAUUGUUUGCACAUAAUUGCAAUUUAAUUAUUUUC-CUCUUCUUU-GCCGU
---....(((.....(((((.((((((...((...(((.(((((-....))))).)))..))))))))))))).)))..............-.........-..... ( -14.50)
>DroMoj_CAF1 38242 100 + 1
GGACUUCUGCUCUUUAUUAUCGUGUAAUUAACUUUUUCCGAAUC-UCCGGAUUUCGAAUUGUUUGCACAUAAUUGCAAUUUAAUUAUUUUCU-----U-UCAGUUCU
(((((................((((((...((...(((.(((((-....))))).)))..))))))))(((((((.....))))))).....-----.-..))))). ( -15.60)
>DroPer_CAF1 23274 102 + 1
---CUUCUGCUCUUUAUUGUCGUGUAAUUAACUUUUUCCGAAUCGUCCGGAUUUGGAAUUGUUUGCACAUAAUUGCAAUUUAAUUAUUU-CUCUCUCUCUC-UCUCU
---....(((.....(((((.((((((...((...(((((((((.....)))))))))..))))))))))))).)))............-...........-..... ( -20.10)
>consensus
___CUUCUGCUCUUUAUUGUCGUGUAAUUAACUUUUUCCGAAUC_UCCGGAUUUGGAAUUGUUUGCACAUAAUUGCAAUUUAAUUAUUUUCUC____U_UC_GCUCU
.......(((.....(((((.((((((...((...(((((((((.....)))))))))..))))))))))))).))).............................. (-16.70 = -17.07 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:47 2006