Locus 3870

Sequence ID 3L_DroMel_CAF1
Location 11,202,253 – 11,202,353
Length 100
Max. P 0.693903
window6023

overview

Window 3

Location 11,202,253 – 11,202,353
Length 100
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 76.26
Mean single sequence MFE -17.30
Consensus MFE -7.33
Energy contribution -9.73
Covariance contribution 2.40
Combinations/Pair 1.15
Mean z-score -1.91
Structure conservation index 0.42
SVM decision value 0.34
SVM RNA-class probability 0.693903
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11202253 100 + 23771897
UAACCGCAUCAAUUCUAACUUCAUAAAACAUUUAAAGGUCUCCUCAUGGUGAUUAUGUUUUUGUA-------------CAGCACGAAAUAUAAUCAUUUUUGGGCGCAUUCCU
...................................(((...(((((.((((((((((((((((..-------------...)).))))))))))))))..)))).)....))) ( -17.50)
>DroSec_CAF1 11088 84 + 1
UAACCGCAUCAAUUCUAACUUCAUAAAACAUUUAAAGGUCUCCUCACUGUGAUUA----------------------------CGAAACAUAAUCAUU-UUGGGUGCAUUCCU
.....(((((.........................(((...)))((..(((((((----------------------------.......))))))).-.)))))))...... ( -12.40)
>DroSim_CAF1 11004 84 + 1
UAACCGCAUCAAUUCUAACUUCAUAAAACAUUUAAAGGUCUCCUCAUUGUGAUUA----------------------------CGAAACAUAAUCAUU-UUGGGUGCAUUCCU
.....(((((.........................(((...)))((..(((((((----------------------------.......))))))).-.)))))))...... ( -13.20)
>DroEre_CAF1 11892 112 + 1
UAACCGCAUCAAUUCUAACUUCAUACAACAUUUAAAGGUCUCCUCCUGGUGAUUAUGUUUUCGUAUUUUAUUUAACAAAAGUACCAAACACAAUCAUU-UUGGGCGUAUUCCU
....(((.((((.......................(((......)))(((((((.(((((..(((((((........))))))).))))).)))))))-)))))))....... ( -19.30)
>DroYak_CAF1 11763 112 + 1
UAACCGCAUCAAUUCUAACUUCAUACUUAAUUUAAAGGUAUCCUCUUGGUGAUUAUGUUUCUGUAUUUUAUUCAACAAAAGUACGAGACACAAUCAUU-UUGGGUGUAUUCUU
.....(((((............((((((.......))))))...(..(((((((.((((((.(((((((........))))))))))))).)))))))-..))))))...... ( -24.10)
>consensus
UAACCGCAUCAAUUCUAACUUCAUAAAACAUUUAAAGGUCUCCUCAUGGUGAUUAUGUUU__GUA______________AG_ACGAAACAUAAUCAUU_UUGGGUGCAUUCCU
.....(((((.........................(((...)))....((((((((((((.........................)))))))))))).....)))))...... ( -7.33 =  -9.73 +   2.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:46 2006