| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,111,915 – 1,112,006 |
| Length | 91 |
| Max. P | 0.813724 |
| Location | 1,111,915 – 1,112,006 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 82.66 |
| Mean single sequence MFE | -21.63 |
| Consensus MFE | -15.47 |
| Energy contribution | -15.33 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.813724 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1111915 91 - 23771897 -GCCAAGCCCAGCACCACCC----------CCUGUUGCAGUGCCACCCAAAAUGCAAUGCCGAGUAUUUCGGCAGAAUGCAGUUUGUUAUAUAACACACAUA -..........(((.((...----------..)).))).(((.....((((.((((.(((((((...)))))))...)))).))))........)))..... ( -19.72) >DroSec_CAF1 5415 100 - 1 CACCGAACGUCGCACCACCCCGGC--CCCUCCUGCUGCAACGCCACCCAAAAUGCAAUGCCGAGUAUUUCGGCAGAAUGCAGUUUGUUAUAUAACACACAUA ...(((((((.(((.((....((.--....)))).))).))...........((((.(((((((...)))))))...)))))))))................ ( -20.90) >DroSim_CAF1 2969 102 - 1 CACCCAACGCUGCACCACCCCCUCCCCCCUCCUGCUGCAAAGCCACCCAAAAUGCAAUGCCGAGUAUUUCGGCAGAAUGCAGUUUGUUAUAUAACACACAUA ....(((.((((((...................(((....)))..............(((((((...)))))))...)))))))))................ ( -19.30) >DroEre_CAF1 3466 102 - 1 CACCCACCGCUGCACCACCCUCCCCCUCUUCCUGCUGCAGCAGCACCCAAAAUGCAAUGCCGAGUAUUUCGGCAGAAUGCAGUUUGUUAUAUAACACACAUA ........((((((.((...............)).))))))......((((.((((.(((((((...)))))))...)))).))))................ ( -25.06) >DroYak_CAF1 5446 92 - 1 CACCCGCUGCUGCACCACCC----------CCUGCUGCAGCACCACCCAAAAUGCAAUGCCGAGUAUUUCGGCAGAAUGCAGUUUGUUAUAUAACACACAUA .....(((((.(((......----------..))).)))))......((((.((((.(((((((...)))))))...)))).))))................ ( -28.40) >DroAna_CAF1 5685 85 - 1 CACCCAU---CGAACCACCC----------AC---UGCACU-GCACCCUCAAUGCAAUGCUGAGUAUUUCGGCAGAAUGCAGUUUGUUAUAUAACACACAUA .......---..........----------((---((((.(-(((.......)))).(((((((...)))))))...)))))).((((....))))...... ( -16.40) >consensus CACCCAACGCUGCACCACCC__________CCUGCUGCAGCGCCACCCAAAAUGCAAUGCCGAGUAUUUCGGCAGAAUGCAGUUUGUUAUAUAACACACAUA ....................................................((((.(((((((...)))))))...))))((.((((....)))).))... (-15.47 = -15.33 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:40 2006