| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,199,433 – 11,199,541 |
| Length | 108 |
| Max. P | 0.625396 |
| Location | 11,199,433 – 11,199,541 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 76.63 |
| Mean single sequence MFE | -36.47 |
| Consensus MFE | -21.84 |
| Energy contribution | -21.57 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.625396 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11199433 108 + 23771897 CAUCAAUGAGGCGCAGCUGCAGCUGCUCACCAGUGGCGAGUAUCUGCUGAAGCAAUUGCGUCGCCGGAAAAACUCCCUGGAGUAUGAUCCUAGCCAGGAAGUGGAGCA-- ..........(((((((....)))))...((..(((((((((..(((....)))..))).)))))).....(((.(((((..((......)).))))).))))).)).-- ( -37.40) >DroVir_CAF1 8785 95 + 1 CAUCAACGAGGCCCAGCUUCAGCUGUUGACCAGCGGCGAGUAUUUGCUGAAGCAGCUGCAUCGACGCAAGAACUCGCUGGACGA---------------UGUGGAGCACG ...............((((((((((.....))))(((((((.((((((((.((....)).)))..))))).)))))))......---------------..))))))... ( -32.50) >DroGri_CAF1 17820 95 + 1 CAUCAACGAGGCGCAGCUGCAGCUGCUGACCAGCGGUGAUUAUCUGCUGAAGCAGCUGCAUCGCCGCAAGAACUCUCUGGACGA---------------UGUGGAGCAGC ...............((((((((((((...((((((.......)))))).)))))))(((((((((..((....)).))).)))---------------)))...))))) ( -38.70) >DroWil_CAF1 12857 96 + 1 CAUCAACGAAGCGCAAUUGCAGUUACUCACCAGCGGUGAUUAUCUGCUCAAGCAAAUGAAUCGGCGCAAGAACUCCUUGGAUGAUGAU------------AUCGAGCC-- (((((.....((((....((((.((.(((((...))))).)).))))(((......)))....))))......((....)))))))..------------........-- ( -24.40) >DroMoj_CAF1 24314 95 + 1 CAUCAACGAAGCGCAGCUGCAGCUGCUGACCAGCGGCGAGUACCUGCUGAAGCAGCUGCACCGGCGCAAGAACUCGCUGGACGA---------------UGUGGAGCACG ((((........((((((((.((((((....)))))).(((....)))...)))))))).((((((........))))))..))---------------))......... ( -40.60) >DroAna_CAF1 8631 108 + 1 CAUCAACGAGGCGCAGCUGCAGCUGCUCACCAGCGGCGAGUAUCUGCUGAAGCAGUUGCGGCGCCGCAAGAACUCGCUGGAGUACGAUCCCGGCCAGGAAGUGGAGCA-- ............((.((((((((((((...((((((.......)))))).)))))))))))).((((.....((.(((((.(......)))))).))...)))).)).-- ( -45.20) >consensus CAUCAACGAGGCGCAGCUGCAGCUGCUCACCAGCGGCGAGUAUCUGCUGAAGCAGCUGCAUCGCCGCAAGAACUCGCUGGACGA_______________UGUGGAGCA__ ..........((...((((((((((((...((((((.......)))))).))))))))))....(....)..............................))...))... (-21.84 = -21.57 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:45 2006