Locus 3865

Sequence ID 3L_DroMel_CAF1
Location 11,189,381 – 11,189,498
Length 117
Max. P 0.907440
window6015

overview

Window 5

Location 11,189,381 – 11,189,498
Length 117
Sequences 3
Columns 117
Reading direction forward
Mean pairwise identity 94.30
Mean single sequence MFE -29.03
Consensus MFE -24.02
Energy contribution -25.13
Covariance contribution 1.11
Combinations/Pair 1.03
Mean z-score -3.43
Structure conservation index 0.83
SVM decision value 1.05
SVM RNA-class probability 0.907440
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11189381 117 + 23771897
ACUUUGUUACAGUGCUGCAAACUAAGCUAUUUCCAAGCCAAAUCUGGCAACUCAUAAAAGAAGCUUUUUGCAAAUUUUAAAAUUAUUAUUGUAAUAACUUUAGAAAAGUAGCAUUGG
.........((((((((((((..(((((........((((....))))...((......))))))))))))...(((((((.((((((...)))))).)))))))....))))))). ( -27.50)
>DroSec_CAF1 8572 117 + 1
ACUUUGUUUCAGUGCUGCUAACUAAGCUAUUUUCAAGCCAAAUCUGGCAACUCAUAAAAGAAGCUCUUUGCUAAUUGUAAAAUUAUUAUUUUAGCAACAUUAGAAAAGUAGCAUUGG
.........((((((((((..(((((((........((((....))))...((......)))))...(((((((..((((.....)))).)))))))..))))...)))))))))). ( -29.80)
>DroSim_CAF1 8529 117 + 1
ACUUUGUUUCAGUGCUGCUAACUAAGCUAUUUUCAAGCCAAAUCUGGCAACUCAUAAAAGAAGCUCUUUGCUAAUUGUAAAAUUAUUAUUUUAGCAACAUUAGAAAAGUAGCAUUGG
.........((((((((((..(((((((........((((....))))...((......)))))...(((((((..((((.....)))).)))))))..))))...)))))))))). ( -29.80)
>consensus
ACUUUGUUUCAGUGCUGCUAACUAAGCUAUUUUCAAGCCAAAUCUGGCAACUCAUAAAAGAAGCUCUUUGCUAAUUGUAAAAUUAUUAUUUUAGCAACAUUAGAAAAGUAGCAUUGG
.........((((((((((..(((((((........((((....))))...((......)))))...((((((...((((.....))))..))))))..))))...)))))))))). (-24.02 = -25.13 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:38 2006