Locus 3864

Sequence ID 3L_DroMel_CAF1
Location 11,179,465 – 11,179,560
Length 95
Max. P 0.926963
window6014

overview

Window 4

Location 11,179,465 – 11,179,560
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 77.62
Mean single sequence MFE -18.78
Consensus MFE -10.20
Energy contribution -10.56
Covariance contribution 0.36
Combinations/Pair 1.07
Mean z-score -2.18
Structure conservation index 0.54
SVM decision value 1.18
SVM RNA-class probability 0.926963
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11179465 95 - 23771897
GCACAGAGAUAAAAAGGGAUGUGAUGCGGUUGGUUUUUUCUUAUCAUUCUUGAUAAGAAACUAGAACAUCCUUUUCUCGUUCAAAACAUAAAAAG
.....((((....(((((((((.......((((((...((((((((....)))))))))))))).)))))))))))))................. ( -24.80)
>DroSec_CAF1 39476 93 - 1
GCACAGAGAUAAAAAGGGAUAUGAUGCGAU--GGUUUUUCUUAUCAUUCUUGAUAAGAAACUAGAGCAUCCUUUUCUCGCUCAAAACAUAAAAAG
.....(((.......((((...(((((..(--((((..((((((((....)))))))))))))..)))))....)))).)))............. ( -26.00)
>DroSim_CAF1 39296 93 - 1
GCACAGAGAUAAAAAGGGAUAUUAUGCGAU--GAUUUUUCUUAUCAUUCUUGAUAAGAAACUAGAACAUCCUUUUCUUGCUCAAAACAUAAAAAG
.....(((....(((((((((((((...))--))).((((((((((....)))))))))).......))))))))....)))............. ( -19.60)
>DroEre_CAF1 41088 78 - 1
ACACAGAUAUGUA-UAU---------------GAUUUUUCUUAUCAUUUGUGUUAAGAAACUAGAACAGCCUU-UUUCGUUCAAAAAUAAAAAAG
(((((((..((.(-((.---------------((....)).))))))))))))..........((((......-....))))............. (  -8.60)
>DroYak_CAF1 42267 80 - 1
ACACAGAGAUGAAAUGG---------------UAUUUUUCUUAUCAUUUUUGAUAAGAAACUAGCACAUCCUUUUUUCGUUCAAAAAUUAAGAAG
....((.((((...(((---------------(....(((((((((....)))))))))))))...))))))....................... ( -14.90)
>consensus
GCACAGAGAUAAAAAGGGAU_U_AUGCG_U__GAUUUUUCUUAUCAUUCUUGAUAAGAAACUAGAACAUCCUUUUCUCGUUCAAAACAUAAAAAG
....................................((((((((((....))))))))))...((((...........))))............. (-10.20 = -10.56 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:37 2006