| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,177,258 – 11,177,378 |
| Length | 120 |
| Max. P | 0.546248 |
| Location | 11,177,258 – 11,177,378 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.11 |
| Mean single sequence MFE | -43.60 |
| Consensus MFE | -20.03 |
| Energy contribution | -21.48 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.546248 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11177258 120 + 23771897 CGAGUUGAGGAAUCUGGAGGCCUUGCCCUCCACUUCGGGAUAGUCAUUGGCCAGACUUUUGUCGGGCCAGCAGUAUUUCUCGGCGGAGAAGAGUAUCUUGGCACCAGACUCCUUGAAUUU ....(..((((.(((((..(((.....((((.((..(..(((.(..((((((.(((....))).)))))).).)))..)..)).))))(((.....)))))).))))).))))..).... ( -47.20) >DroVir_CAF1 44178 120 + 1 CGAGUUUAAAAAACGUGAGGCUUUGCCCUCCACCUCGGGAUAUUGAUCUGCCAGACUCUUGUCCGGCCAGCAGUAUUUUUCGGCCGAGAAGAGCAGCUUGGCGCCAGACUCUUUGAAUUU .((((((......(....)(((..((.(((...((((((((((((....(((.(((....))).)))...)))))))......)))))..)))..))..)))...))))))......... ( -36.50) >DroPse_CAF1 86964 120 + 1 CGAGUUGAGGAAGCGCGAGGCAUUGCCCUCCACCUCGGGGUAUGCAUCGGUCAGGCUACUGUCCGGCCAGCAGAACUUCUCUGCGGAGAAGAGCAGCUUGGCCUUCGACUCCUUGAACAA .((((((((((.((.(((.((((.(((((.......))))))))).)))))(((....))))))(((((((.(..((((((....))))))..).)).))))).)))))))......... ( -49.00) >DroGri_CAF1 41057 120 + 1 UGAGUUCAAGUAACGGGACUCCUUGCCCCCCACCUCGGGAUACUGAUUGGCCAGACUCUUGUCGGGCCAACAGUAUUUCUCGGCCGAGAAGAGCAACUUCGCGUCGGAUUCCUUAAACUU .......((((...((((.(((..(((.(((.....)))((((((.((((((.(((....))).)))))))))))).....)))((.((((.....)))).))..))).))))...)))) ( -43.30) >DroMoj_CAF1 45044 120 + 1 CGAGUUCAAAUAACGUGACUCCUUGGCCCCCACCGCAGGAUAACUAUCCGCGAGACUCUUGUCGGGCCAGCAAUAUUUCUCUGCCGAGAACAGCACCUUGGCACCGGAUUCCUUGAACUU .((((((((.....(.((.((((((((((....(((.((((....))))))).(((....))))))))))...........(((((((........)))))))..))).))))))))))) ( -42.60) >DroAna_CAF1 40927 120 + 1 GGAGUUGAGGAAGCGAGAGGCCUUGCCCUCCACUUCGGGAUAAGCGUUGGCCAGGCUCUUAUCCGGCCAGCAGUAUUUCUCGGCAGAGAUGAGUACCUUGGCACCGGAAUCCUUGAAUUU (((((.((((..(((((....))))))))).)))))(((((...((...((((((..(((((((.(((((........)).))).).))))))..)).))))..))..)))))....... ( -43.00) >consensus CGAGUUGAAGAAACGGGAGGCCUUGCCCUCCACCUCGGGAUAAUCAUCGGCCAGACUCUUGUCCGGCCAGCAGUAUUUCUCGGCCGAGAAGAGCACCUUGGCACCGGACUCCUUGAACUU .((((((......((.((((..((((..(((.....))).........((((.(((....))).)))).))))..)))).))((.(((........))).))...))))))......... (-20.03 = -21.48 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:34 2006