| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,171,367 – 11,171,484 |
| Length | 117 |
| Max. P | 0.988452 |
| Location | 11,171,367 – 11,171,484 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 89.85 |
| Mean single sequence MFE | -28.68 |
| Consensus MFE | -23.37 |
| Energy contribution | -24.01 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.81 |
| SVM decision value | 2.12 |
| SVM RNA-class probability | 0.988452 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11171367 117 + 23771897 GUAUAUUGUUUGCUGGCCUUUAAGCCAAUGUCCGCUUAGUUUAUUUAGUUCUUCCUAAUUUAUA-AAAAAUUGUGACGAACCAACCAGCUACGCGGACGAAAAUCGAGCAAUAACAUA ((.(((((((((.((((......)))).(((((((.(((((......((((.((.((((((...-..)))))).)).)))).....))))).))))))).....)))))))))))... ( -35.60) >DroSec_CAF1 31475 113 + 1 GUAUAUUGUUUGCUGGCCUUUAAGCCAAUGUCCGCUUAGUUUAUUUAGCACUUCCUAUUUUAUU-AAAAAUUGAGACGAAC----CAGCUGCGCGGACGAAAAUCGAGCAAUAACAUA ((.(((((((((.((((......)))).(((((((.(((((..(((....(((...(((((...-.))))).)))..))).----.))))).))))))).....)))))))))))... ( -28.40) >DroSim_CAF1 31286 111 + 1 UUAUAUUUGUU--UGGCCUUUAAGCCAAUGUCCGCUUAGUUUAUUUAGCACUUCCUAUUUUAUU-AAAAAUCGAGACGAAC----CAGCUGCGCGGACGAAAAUCGAGCAAUAACAUA ......(((((--((((......)))..(((((((.(((((..(((....(((...(((((...-.))))).)))..))).----.))))).)))))))......))))))....... ( -22.40) >DroEre_CAF1 32590 114 + 1 GUAUAUUGUUUGCUGGCUUUUAAGCCAAUCUCCGUUCAGUUUAUUUGGUACUUCCUAUUUUGUUGAAAAAUUCAGACGAAC----CAGCUGCGCGGACGAAAAUCGAGCAAUAACAUA ((.(((((((((.(((((....))))).(((((((.((((.....((((.(.((..(((((.....)))))...)).).))----)))))).))))).))....)))))))))))... ( -31.70) >DroYak_CAF1 33912 114 + 1 GUAUAUUGUUUGCUGGCCUUUAAGCCAAUGUCCGUUUAAUUUAUUUGGUACUUCCUAUUUUAAUAAAAAAUUGAGACAAAC----CAGCUGCGCGGACGAAAAUCGAGCAAUAACAUA ((.(((((((((.((((......)))).(((((((.........(((((...(((.(((((.....))))).).))...))----)))....))))))).....)))))))))))... ( -25.32) >consensus GUAUAUUGUUUGCUGGCCUUUAAGCCAAUGUCCGCUUAGUUUAUUUAGUACUUCCUAUUUUAUU_AAAAAUUGAGACGAAC____CAGCUGCGCGGACGAAAAUCGAGCAAUAACAUA ...(((((((((.((((......)))).(((((((.(((((...............(((((.....)))))...............))))).))))))).....)))))))))..... (-23.37 = -24.01 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:32 2006