Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 11,169,291 – 11,169,389 |
Length | 98 |
Max. P | 0.778800 |
Location | 11,169,291 – 11,169,389 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 91.84 |
Mean single sequence MFE | -27.45 |
Consensus MFE | -25.36 |
Energy contribution | -26.93 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.12 |
Mean z-score | -1.53 |
Structure conservation index | 0.92 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.778800 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11169291 98 - 23771897 GGCCAAGCAUGUGUGAAACUUCCUCACAGUGGAAAAACAUAUGGUGGCAAGUUCAGUGCUUAAGGUUCGAGAACGCAAGUUUCCACACUUGAUUAUAU .((((..(((((((.....((((.......))))..))))))).)))).......(((.(((((((..(..(((....)))..))).))))).))).. ( -26.10) >DroSec_CAF1 29570 98 - 1 GGCCAAGCAUGUGUGAAACUUCCUCUCAGUGGGAAAACAUAUGGUGGCAAGUUCAGUGCUUAAGGUUCGAGAACGCAAGUUUCCACACUUGAUUAUAU .((((..(((((((.....(((((......))))).))))))).)))).......(((.(((((((..(..(((....)))..))).))))).))).. ( -26.40) >DroEre_CAF1 30993 98 - 1 GGCUAAGCAUGUGUGGAACUUCCUCACAGUAGGAAAACAUAUGGUGGCAAGUUCAGUGCUUAAGGUUCGAGAACGCAGGUUUUCACACUUGAGUAUAU .((((..(((((((.....(((((......))))).))))))).)))).......(((((((((((..((((((....)))))))).))))))))).. ( -30.10) >DroYak_CAF1 32101 98 - 1 GGCCAAGCAUGUGUGAAACUUCCUCGCAGUGGGAAAACAUAUGGUGGCAAGUUCAGUGCUUAAGGUUCGGAAACACAAGUUUCCACACUCCAGAUUAU .((((..(((((((.....(((((......))))).))))))).))))((((.....))))..((...((((((....)))))).....))....... ( -27.20) >consensus GGCCAAGCAUGUGUGAAACUUCCUCACAGUGGGAAAACAUAUGGUGGCAAGUUCAGUGCUUAAGGUUCGAGAACGCAAGUUUCCACACUUGAGUAUAU .((((..(((((((.....(((((......))))).))))))).)))).......(((((((((((..((((((....)))))))).))))))))).. (-25.36 = -26.93 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:31 2006