Locus 3858

Sequence ID 3L_DroMel_CAF1
Location 11,167,072 – 11,167,169
Length 97
Max. P 0.911440
window6007

overview

Window 7

Location 11,167,072 – 11,167,169
Length 97
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 71.22
Mean single sequence MFE -25.70
Consensus MFE -11.66
Energy contribution -13.25
Covariance contribution 1.59
Combinations/Pair 1.18
Mean z-score -1.99
Structure conservation index 0.45
SVM decision value 1.08
SVM RNA-class probability 0.911440
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11167072 97 - 23771897
GGCUGAAAUGCGUC--AGUGGAAAGUCCGCACUCAUUAGCCGUGAUUUUCUUGCUACCCUGCUCUUGACCGAAACGCAUUUCACA-AGGCAAAUCCUUCU
...((((((((((.--...(((((((((((........).)).)))))))).((......))...........)))))))))).(-(((.....)))).. ( -23.10)
>DroSec_CAF1 27416 84 - 1
GGCUGAAAUGCGUCACAGUGGAAAGUCCGCACUCAUUAGCGGUGAUUUUCCAGCUACCCUG---------------CAUUUCACC-AGGAAAAUCCUACU
((.(((((((((....((((((((((((((........))))..)))))))).))....))---------------)))))))))-(((.....)))... ( -30.20)
>DroSim_CAF1 28166 84 - 1
GGCUGAAAUGCGUCACAGUGGAAAGUCCGCACUCAUUAGCGGUGAUUUUCCAGCUACCCUG---------------AAUUUCAUC-AGGAAAAUCCUACU
((((.....((......))(((((((((((........))))..)))))))))))..((((---------------(......))-)))........... ( -22.50)
>DroEre_CAF1 28938 97 - 1
GGCUGAAAUGCGUC--AGUGGAAAGUCCGCACUCAUUACCCGUGAUUUCCCUGCUCUUGUGUUUUUCACUGAAACGCACUUCAGA-AGGAAAAUCCUCCU
..(((((.((((((--(((((((((..((((...((((....)))).....)))....)..)))))))))))..)))).))))).-((((......)))) ( -27.50)
>DroYak_CAF1 29430 97 - 1
GGCUGAAAAGCGUC--AGUGGAAAGUCCGCACUCAUUAGCCGUGAUUUUCCUGCUCUUUUGUUUUCCACUGAGACGCACUUCAGA-AGCAAAAUCCUUCU
..(((((..(((((--((((((((....(((......(((.(.(.....)).)))....)))))))))))..)))))..))))).-.............. ( -24.10)
>DroAna_CAF1 30611 87 - 1
GGACGAAGUGCGUC--AUCGUCGAAUCGGAAGCCAUUAGCAGUGAUUCCU-----------UUUCGCACCGAAACGCACUUCAGAAAAGCAAAUCCUUCU
(((.(((((((((.--.(((.((((..((((..(((.....))).)))).-----------.))))...))).))))))))).(.....)...))).... ( -26.80)
>consensus
GGCUGAAAUGCGUC__AGUGGAAAGUCCGCACUCAUUAGCCGUGAUUUUCCUGCUACCCUGUUUU_CAC_GAAACGCACUUCAGA_AGGAAAAUCCUUCU
....(((((((((....((((.....))))..((((.....))))............................))))))))).................. (-11.66 = -13.25 +   1.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:30 2006