| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,160,716 – 11,160,845 |
| Length | 129 |
| Max. P | 0.999641 |
| Location | 11,160,716 – 11,160,808 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 74.30 |
| Mean single sequence MFE | -26.46 |
| Consensus MFE | -14.23 |
| Energy contribution | -14.95 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.12 |
| Mean z-score | -3.04 |
| Structure conservation index | 0.54 |
| SVM decision value | 3.82 |
| SVM RNA-class probability | 0.999641 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11160716 92 + 23771897 AACAAAUAAAGCCGCAAUGGAA------AUGGAAACAACUGGAUGUGA-----------GUAUA--------CAUAUAUGAAUGCAUCCCAGCCAGACGGGGCACAUUUAGUGGGCA ..........(((.........------.((....))((((((((((.-----------((((.--------((....)).)))).((((........)))))))))))))).))). ( -26.50) >DroSec_CAF1 21279 100 + 1 AACAAAUAAAGCCGCAAUGGAA------AUGGAAACAACUGGAUGUAC-----------AUAUACAUACAUACAUAUAUGAAUGCAUCCCAGCCAGACGGGGCUCAUUUAGUGGGCA ...........(((...(((..------.((....)).((((((((((-----------(((((..........))))))..))))).)))))))..))).((((((...)))))). ( -26.80) >DroSim_CAF1 21966 87 + 1 AACAAAUAAAGCCGCAAUGGAA------AUGGAAACAACUGGGUGUAC-----------AUAUACAUACAUACAUAUAUGAAUGCAUCCCAGCCAGACGGG-------------GCA ..........(((.(..(((..------.((....)).((((((((((-----------(((((..........))))))..)))).))))))))...).)-------------)). ( -25.90) >DroEre_CAF1 22080 87 + 1 A---AAUAAAGCCGCAAUGGAAAUGGAAAUGGAAACAACUGGAUA---------------------------UAUAUGUGAAUGCAUCCCAGCCAGACGGGGCACAUCAAGUGGGCA .---......(((((..((....(((...((....)).((((...---------------------------...((((....)))).)))))))..))..)).(((...)))))). ( -18.70) >DroYak_CAF1 22634 117 + 1 AACAAAUAAAGCCGCAAUGGAAAUGGAAAUGGAAACAACUGGAUGUACUGCAUAUUUGUAUGUAUAUAUAUGUAUAUGUGAAUGCAUCCCCGCCAGACGGGGCACAUCAAGUGGGCA ..........(((................((....))(((.(((((..(((((..(..((((((((....))))))))..)))))).(((((.....))))).))))).))).))). ( -34.40) >consensus AACAAAUAAAGCCGCAAUGGAA______AUGGAAACAACUGGAUGUAC___________AUAUA_AUA_AU_CAUAUAUGAAUGCAUCCCAGCCAGACGGGGCACAUCAAGUGGGCA ..........(((.(..(((.........((....))...(((((((...................................)))))))...)))...).))).............. (-14.23 = -14.95 + 0.72)
| Location | 11,160,749 – 11,160,845 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 71.52 |
| Mean single sequence MFE | -26.27 |
| Consensus MFE | -15.44 |
| Energy contribution | -15.25 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.59 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.527358 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11160749 96 + 23771897 UGGAUGUGA-----------GUAUA--------CAUAUAUGAAUGCAUCCCAGCCAGACGGGGCACAUUUAGUGGGCAUGGUUAUGUGCACUGUGCAAAAUGAUCAGGCACAUCA .(((((((.-----------.((((--------....))))..)))))))..(((.((((..(((((....(((.((((....)))).))))))))....)).)).)))...... ( -27.80) >DroSec_CAF1 21312 93 + 1 UGGAUGUAC-----------AUAUACAUACAUACAUAUAUGAAUGCAUCCCAGCCAGACGGGGCUCAUUUAGUGGGCAUGGUUAAGUGCACUGCGCAAAAUAUU----------- .((((((((-----------(((((..........))))))..))))))).(((((......((((((...)))))).)))))..((((...))))........----------- ( -24.00) >DroEre_CAF1 22116 85 + 1 UGGAUA---------------------------UAUAUGUGAAUGCAUCCCAGCCAGACGGGGCACAUCAAGUGGGCAUGGUUAAGUGCACUGCGCAAAAUUAUCAAGCAUA--- ..((((---------------------------....((((..(((((.((((((..((..((....))..)).))).)))....)))))...))))....)))).......--- ( -20.30) >DroYak_CAF1 22673 111 + 1 UGGAUGUACUGCAUAUUUGUAUGUAUAUAUAUGUAUAUGUGAAUGCAUCCCCGCCAGACGGGGCACAUCAAGUGGGCAUAGUUAAGUGCACUGCGCAAAAUUAUCAAGCUU---- ..(((((..(((((..(..((((((((....))))))))..)))))).(((((.....))))).)))))((((..(.((((((..((((...))))..)))))))..))))---- ( -33.00) >consensus UGGAUGUAC___________AUAUA________CAUAUAUGAAUGCAUCCCAGCCAGACGGGGCACAUCAAGUGGGCAUGGUUAAGUGCACUGCGCAAAAUUAUCAAGCAU____ ...........................................(((......(((......))).......(..(((((......)))).)..)))).................. (-15.44 = -15.25 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:23 2006