| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,158,755 – 11,158,863 |
| Length | 108 |
| Max. P | 0.724238 |
| Location | 11,158,755 – 11,158,863 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.41 |
| Mean single sequence MFE | -17.68 |
| Consensus MFE | -4.06 |
| Energy contribution | -6.74 |
| Covariance contribution | 2.68 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.23 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.724238 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11158755 108 - 23771897 UGCGUCGCAAUAAGCUAAUUAAAUUAAAACCUU--------AACGACAAAACCGAAAUCAAUCAAAAUUUAGUUCGAAACCGUAUCGAACUAUUU----UGUUUUUCAACCGCACAGCAA (((((((...((((................)))--------).))))......((((.....(((((..((((((((.......)))))))))))----))..)))).........))). ( -18.99) >DroSec_CAF1 19256 112 - 1 UGCUGCGCAAAGAGCUAAUUAAAUUAAAACCCU--------AAAGUCAAAACACAAAUCAAUCAAAGUUUACUUCGAAACCGUAUCGAACAAUUUCUUAUUUUUUUCAAACGCACAGCAA (((((.((...(((((.......(((......)--------)).((......))...........)))))..(((((.......)))))......................)).))))). ( -13.40) >DroSim_CAF1 20023 112 - 1 UGCUGCGCAAUGAGCUAAUUAAAUUAAAACCCU--------AAAGUCAAAACACAAAUCAAUCAAAAUUUAGUUCGAAACCGUAUCGAACAAUUUUUUUUAUUUUGCAAACGCACAGCAA (((((.((..(((.((.................--------..))))).....((((..((..((((((..((((((.......))))))))))))..))..)))).....)).))))). ( -18.51) >DroEre_CAF1 20027 110 - 1 UGCGGUGCGAUGAGUUAAUUAAAUU----CCCUAUGGUGUGAAAGCCAAAACCCAAAUCAAUCAAAAUUUAGG-CAAACCCGUAUCAAACAAUUUUC-----AUUAAAACCGCACUUCAA ((((((..((((((...........----...(((((.((....(((........................))-)..)))))))..........)))-----)))...))))))...... ( -19.41) >DroYak_CAF1 20472 110 - 1 UGCGGCGCAAUGAGUUAAUUAAAAUAAAACCCGAUGGGGUGAAUGUCCAGACUCAAAUCAAUCAAAAUUAAGUUCAAAAUCGUAUCAAACAAUUUUU-----AUUAAAACCGCAC----- (((((.....((((((............((((....)))).........))))))............((((....(((((.((.....)).))))).-----.))))..))))).----- ( -18.10) >consensus UGCGGCGCAAUGAGCUAAUUAAAUUAAAACCCU________AAAGUCAAAACACAAAUCAAUCAAAAUUUAGUUCGAAACCGUAUCGAACAAUUUUU__U_UUUUACAACCGCACAGCAA (((((.((..(((.....)))..................................................((((((.......)))))).....................)).))))). ( -4.06 = -6.74 + 2.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:22 2006