Locus 3851

Sequence ID 3L_DroMel_CAF1
Location 11,156,968 – 11,157,074
Length 106
Max. P 0.755155
window5997

overview

Window 7

Location 11,156,968 – 11,157,074
Length 106
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 75.72
Mean single sequence MFE -17.00
Consensus MFE -6.33
Energy contribution -7.23
Covariance contribution 0.90
Combinations/Pair 1.22
Mean z-score -1.92
Structure conservation index 0.37
SVM decision value 0.49
SVM RNA-class probability 0.755155
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11156968 106 - 23771897
AAAACGCUGGGCAGCAGUGAAAUAAAUCGUGGGA---ACAUGUACUGUUUACUUUGUUU-AAAAAUAACAAUAGAACGUGAACGAUAUAAGCAACA---AAACCAUAAAGAUA
....(((((.....))))).........((((..---...(((..((((((..((((((-(....((....)).....)))))))..)))))))))---...))))....... ( -18.40)
>DroSec_CAF1 17554 93 - 1
--------------CAGUAAAAUAAAUCGUGGGA---AUAUGUACUGUUUACUUUGCUUCAAAAAUAACAAUAGAAAGUGAACGAUAUAAGCUACA---AAACCAUAAAGAUA
--------------..............((((..---.(((((...(((((((((.((..............))))))))))).)))))..)))).---.............. ( -12.94)
>DroSim_CAF1 18264 92 - 1
--------------CAGUAAAAUAAAUCGUGGGA---AUAUGUACUGUUUACUUUGCAU-AAAAAUAACAAUAGAAAGUGAACGAUAUAAGCUACA---AAACCAUAAAGAUA
--------------..............((((..---.(((((...(((((((((....-..............))))))))).)))))..)))).---.............. ( -11.87)
>DroEre_CAF1 18301 89 - 1
--------------------AAUAAAUCGUGGGA---ACAUGUUCUGUUUAUUUUGCUA-AGAAAUAACAAUAGAACGUGAACCAUACAAGCCCCAACAAAACCAUGAAGAUA
--------------------......((((((..---.(((((((((((((((((....-.))))))..)))))))))))..........(......)....))))))..... ( -20.30)
>DroYak_CAF1 18708 102 - 1
GGAACUUAGGGCAACAGUAGAAUAAAUCGUGGGAUGCACAU-----GUUUAUUUUGCUA-AAAAACAACAAUAGAAGGUUAACGAU--AAGCCCCA---AAACCACAAAGAUA
((......((((...(((((((((((.((((.......)))-----)))))))))))).-......(((........)))......--..))))..---...))......... ( -21.50)
>consensus
______________CAGUAAAAUAAAUCGUGGGA___ACAUGUACUGUUUACUUUGCUU_AAAAAUAACAAUAGAAAGUGAACGAUAUAAGCCACA___AAACCAUAAAGAUA
............................((((........((((.((((((((((...................)))))))))).)))).............))))....... ( -6.33 =  -7.23 +   0.90)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:21 2006