Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 11,154,346 – 11,154,438 |
Length | 92 |
Max. P | 0.669841 |
Location | 11,154,346 – 11,154,438 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 90.81 |
Mean single sequence MFE | -16.83 |
Consensus MFE | -12.82 |
Energy contribution | -12.71 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.07 |
Mean z-score | -2.51 |
Structure conservation index | 0.76 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.669841 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11154346 92 + 23771897 AGAACAAUACCACCCCAUAACACCCACCCACUCACAUGCAAGGCGGUGGCAAAUAUAAAUGCAUUCAUUUUGCAAAAUAAACUCGGAUAUUC .........((............(((((..((........))..)))))..........((((.......))))..........))...... ( -13.30) >DroSec_CAF1 14952 88 + 1 AGAACCACACCAACCCAUAGCACCCACC----CACAUGCAAGGGGUUGGAAAAUAUAAAUGCAUUCAUUUUGCAAAAUAAACUCGGAUAUUC ....((...(((((((...(((......----....)))...)))))))..........((((.......))))..........))...... ( -20.60) >DroSim_CAF1 15680 88 + 1 AGAACAACACCAACCCAUACCACCCACC----CACAUGCAGGGGGUUGGAAAAUAUAAAUGCAUUCAUUUUGCAAAAUAAACUCGGAUAUUC .........((........(((.((.((----(.......))))).)))..........((((.......))))..........))...... ( -16.60) >consensus AGAACAACACCAACCCAUAACACCCACC____CACAUGCAAGGGGUUGGAAAAUAUAAAUGCAUUCAUUUUGCAAAAUAAACUCGGAUAUUC .((......(((((((....((..............))....)))))))..........((((.......))))........))........ (-12.82 = -12.71 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:20 2006