Locus 385

Sequence ID 3L_DroMel_CAF1
Location 1,109,729 – 1,109,840
Length 111
Max. P 0.927357
window567

overview

Window 7

Location 1,109,729 – 1,109,840
Length 111
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 91.81
Mean single sequence MFE -31.97
Consensus MFE -23.77
Energy contribution -24.38
Covariance contribution 0.61
Combinations/Pair 1.07
Mean z-score -4.10
Structure conservation index 0.74
SVM decision value 1.18
SVM RNA-class probability 0.927357
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1109729 111 + 23771897
GAUGCGAAUGCCACGUUUGUCGCGCCUACAAGCGAAAUUUUCUCUAAAACAAAAUUAAUUCCAAUUUUUGUUUUUGUAGAAAAUUUUGGCGUUGGC---AAACAUUACAACAAG------
..(((.((((((((((((((.......)))))))((((((((((.(((((((((...........))))))))).).)))))))))))))))).))---)..............------ ( -33.40)
>DroPse_CAF1 5271 120 + 1
UGGGUGCAUGCAACGUUUGUCGCGCCUACAAGCGAAAUUUUCUCUAAAACAAAAUUAAUUCCAAUUUUUGUUUUUGUAGAAAAUUUUGGCGUUGCCCAAAAACAUUACAACAACAACAGA
((((((.((((..(((((((.......)))))))((((((((((.(((((((((...........))))))))).).)))))))))..))))))))))...................... ( -30.20)
>DroSec_CAF1 3259 105 + 1
GAUGCGAAUGCCA------UCGCGCCUACGAGCGAAAUUUUCUCUAAAACAAAAUUAAUUCCAAUUUUUGUUUUUGUAGAAAAUUUUGGCGUUGGC---AAACAUUACAACAAG------
..(((.(((((((------((((........))))(((((((((.(((((((((...........))))))))).).)))))))).))))))).))---)..............------ ( -31.50)
>DroSim_CAF1 792 111 + 1
GAUGCGAAUGCCACGUUUGUCGCGCCUACGAGCGAAAUUUUCUCUAAAACAAAAUUAAUUCCAAUUUUUGUUUUUGUAGAAAAUUUUGGCGUUGGC---AAACAUUACAACAAG------
..(((.((((((((((((((.......)))))))((((((((((.(((((((((...........))))))))).).)))))))))))))))).))---)..............------ ( -33.10)
>DroEre_CAF1 1278 111 + 1
GAUGUGAAUGCCACGUUUGUCGCGCCUACAAGCGAAAUUUUCUCUAAAACAAAAUUAAUUCCAAUUUUUGUUUUUGUAGAAAAUUUUGGCGUUGCC---AAACAUUACAACAAG------
(((((.((((((((((((((.......)))))))((((((((((.(((((((((...........))))))))).).))))))))))))))))...---..)))))........------ ( -28.90)
>DroYak_CAF1 3173 111 + 1
GAUGUGAAUGCCACGUUUGUCGCGCCUACAAGCGAAAUUUUCUCUAAAACAAAAUUAAUUCCAAUUUUUGUUUUUGUAGAAAAUUUCGGCGCUGGC---AAACAUUACAACAAG------
...(((.....)))((((((((((((.......(((((((((((.(((((((((...........))))))))).).))))))))))))))).)))---))))...........------ ( -34.71)
>consensus
GAUGCGAAUGCCACGUUUGUCGCGCCUACAAGCGAAAUUUUCUCUAAAACAAAAUUAAUUCCAAUUUUUGUUUUUGUAGAAAAUUUUGGCGUUGGC___AAACAUUACAACAAG______
...((.((((((.........((........))(((((((((((.(((((((((...........))))))))).).)))))))))))))))).))........................ (-23.77 = -24.38 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:38 2006