Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 11,151,827 – 11,151,925 |
Length | 98 |
Max. P | 0.516721 |
Location | 11,151,827 – 11,151,925 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 79.23 |
Mean single sequence MFE | -24.06 |
Consensus MFE | -18.16 |
Energy contribution | -18.72 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.06 |
Mean z-score | -1.31 |
Structure conservation index | 0.75 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516721 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11151827 98 - 23771897 AAUGCCCCUGGGAAAAUGCAAUCACCUGCGACAGCCAGGACCUCCA-ACUGCCGUCUGCAGGAUUCGUGCGAGGUCAGGGUCUGAACCACAUCAACAAU ........(((.....((((......)))).(((((..((((((((-.((((.....))))......)).))))))..)).)))..))).......... ( -28.30) >DroSec_CAF1 12513 78 - 1 AAUCCC-------------AAUCC-------CAGCCAGGACCUCCA-ACGGCCGUCAGCUGGAUUCGUGCGAGGUCAGGGUCUGAACCACAUCAACAAU ......-------------.....-------(((((..((((((((-.((((.....))))......)).))))))..)).)))............... ( -22.30) >DroSim_CAF1 13292 78 - 1 AAUCCC-------------AAUCC-------CAGCCAGGACCUCCA-ACGGCCGUCAGCAGGAUUCGUGCGAGGUCAGGGUCUGAACCACAUCAACAAU ......-------------.....-------(((((..((((((((-.((.((.......))...)))).))))))..)).)))............... ( -22.00) >DroEre_CAF1 12842 97 - 1 AAUACC-CUAAGCAAAUUCAAUCACCUGCGGAACCCAGGACCUCCA-ACUGCCGUCUGCAGGAUUCGUGCGAGGUCAGGGUCUGAACCACAUCAACAAU ...(((-((................(((.(....))))((((((((-.((((.....))))......)).))))))))))).................. ( -24.50) >DroYak_CAF1 13145 85 - 1 AUU--------------CAAAUCAGCUGCGACACCCAGGACCUCCAAACUGCCGUCUGCAGGAUUCAUGCGAGGUCAGGGUCUGAGCCACAUCAACAAU ...--------------.......(((..(((.((...((((((((..((((.....))))......)).)))))).)))))..)))............ ( -23.20) >consensus AAUCCC_____________AAUCA_CUGCG_CAGCCAGGACCUCCA_ACUGCCGUCUGCAGGAUUCGUGCGAGGUCAGGGUCUGAACCACAUCAACAAU ...............................(((((..((((((((..((((.....))))......)).))))))..)).)))............... (-18.16 = -18.72 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:18 2006