Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 11,133,289 – 11,133,409 |
Length | 120 |
Max. P | 0.715500 |
Location | 11,133,289 – 11,133,409 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.06 |
Mean single sequence MFE | -39.27 |
Consensus MFE | -33.24 |
Energy contribution | -32.42 |
Covariance contribution | -0.83 |
Combinations/Pair | 1.29 |
Mean z-score | -1.81 |
Structure conservation index | 0.85 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.715500 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11133289 120 - 23771897 AGGCCGCCGGUGGAAUGAUCUCACGAGAAGCGGCAAUCUCUUGCCAAUUUUCGAAAUUAUUAUCAAUUACCGUCUUGCCGGUGGUGUGGUAGACCAUCCAGUGUUUGGCGAUCGAGCACU ..((((((((..(.(((......((((((..(((((....)))))..)))))).((((......))))..))).)..))))))))((((....))))..((((((((.....)))))))) ( -42.40) >DroVir_CAF1 30413 120 - 1 AUGCGGCCGGCGGAAUUAUCUCACGAGAAGCGGCAAUCUCUUGCCAAUUUUCGAAAUUAUUAUCAAUUACUGUUUUGCCGGUGGCAUGGUAGGCCAUCCAGUGCUUGGCGAUCGAGCACU ((((.(((((((((((.......((((((..(((((....)))))..)))))).((((......))))...))))))))))).))))((....))....((((((((.....)))))))) ( -45.80) >DroGri_CAF1 32089 120 - 1 AUGCGGCCGGCGGUAUAAUCUCACGAGAAGCGGCAAUUUCUUGCCAAUUUUCGAAAUUAUUAUCAAUUAUUGUUUUGCCAGUGGUGUGGUAGGCCAUCCAGUGCUUGGCUAUCGAGCACU ....((((...............((((((..(((((....)))))..)))))).......((((((((((((......))))))).)))))))))....((((((((.....)))))))) ( -38.30) >DroWil_CAF1 38964 120 - 1 AUGCGGCCGGCGGAAUGAUCUCACGAGAAGCAGCAAUUUCUUGCCAAUUUUCGAAAUUAUUAUCAAUUACUGUUUUUCCGGUGGUAUGAUAGGCCAUCCAAUGUUUGGCUAUCGAACACU ((((.(((((..((((.......((((((...((((....))))...)))))).((((......))))...))))..))))).))))(((((.(((.........))))))))....... ( -31.90) >DroMoj_CAF1 34872 120 - 1 AUGCGGCCGGCGGUAUUAUCUCACGGGAAGCGGCAAUUUCUUGCCAAUUUUCGAAAUUAUUAUCAAUUACUGUUUUGCCGGUGGUGUGGUAGGCCAUCCAGUGCUUGGCGAUCGAGCACU ..((.((((((((((.((.....((..((..(((((....)))))..))..))....)).))))(((....)))..)))))).))((((....))))..((((((((.....)))))))) ( -40.00) >DroAna_CAF1 30356 120 - 1 AAGCAGCCGGGGGAAUGAUCUCACGAGAUGCGGCGAUCUCUUGCCAAUUUUCGAAAUUAUUAUCAAUUACCGUCUUGCCGGUGGUGUGGUAAGCCAUCCAGUGUUUGGCGAUCGAGCACU .....(((((((((....)))).(((((((.(((((....))))).......((........))......))))))))))))((.((((....))))))((((((((.....)))))))) ( -37.20) >consensus AUGCGGCCGGCGGAAUGAUCUCACGAGAAGCGGCAAUCUCUUGCCAAUUUUCGAAAUUAUUAUCAAUUACUGUUUUGCCGGUGGUGUGGUAGGCCAUCCAGUGCUUGGCGAUCGAGCACU ........(((............((((((..(((((....)))))..))))))......(((((((((((((......))))))).)))))))))....((((((((.....)))))))) (-33.24 = -32.42 + -0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:13 2006