| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,110,249 – 11,110,344 |
| Length | 95 |
| Max. P | 0.552267 |
| Location | 11,110,249 – 11,110,344 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 74.23 |
| Mean single sequence MFE | -16.43 |
| Consensus MFE | -8.60 |
| Energy contribution | -8.72 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.552267 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11110249 95 + 23771897 UUUACUGACCUAUCUAUCCAACUAUUCUAUAUCUAUAUUGUAAUAACUGGGUGGGCGUGCAACUUCCGUUCAAUAUCCGGCCCACCUUUCUAUUU .........................................((((...((((((((.((.(((....))))).......))))))))...)))). ( -14.80) >DroSec_CAF1 7052 90 + 1 UUU--UGACCUACAAAUAU--AUAUUCUAUAUAUAU-UUGUAAAAACUGGGUGGGCGGGCAACUUCCGUUCAAUAUCCGGCCCUCCUUUCUAUUU ...--.....(((((((((--((((...))))))))-)))))......(((.((((.((.(((....)))......)).)))).)))........ ( -23.60) >DroEre_CAF1 9342 88 + 1 CCUUCUGACUUACAACUAU--CUAUUCUAUAUCUAU-UUAUAAUAGCCGGGUGGG----CAGCUUCCGUCCCAUAUCCGGCCUUCCUUUCUAUUU ...................--...............-........((((((((((----(.......))))...))))))).............. ( -15.50) >DroYak_CAF1 5460 73 + 1 UU---------------UU--CUAUUCUAUAUCUAG-CUGUAAUGACUGGGUGGG----CAACUUCCGUCCGAUAUCCGGCCCUCCUUUCUAUUU ..---------------..--...............-.......((..(((.(((----(....((.....))......)))).))).))..... ( -11.80) >consensus UUU__UGACCUACAAAUAU__CUAUUCUAUAUCUAU_UUGUAAUAACUGGGUGGG____CAACUUCCGUCCAAUAUCCGGCCCUCCUUUCUAUUU ................................................((((.((.....(((....)))......)).))))............ ( -8.60 = -8.72 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:08 2006