Locus 3837

Sequence ID 3L_DroMel_CAF1
Location 11,089,692 – 11,089,804
Length 112
Max. P 0.535488
window5973

overview

Window 3

Location 11,089,692 – 11,089,804
Length 112
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 74.95
Mean single sequence MFE -24.65
Consensus MFE -15.36
Energy contribution -14.81
Covariance contribution -0.55
Combinations/Pair 1.33
Mean z-score -1.22
Structure conservation index 0.62
SVM decision value 0.00
SVM RNA-class probability 0.535488
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11089692 112 - 23771897
UCAUAUAUAUAUAUAUAUGAACUCU--UUCCUGUCUUCUCCCCACAGAUAAUUCGCGCGAGAGCUCACCGCUCCAAGAUAUUGUGUUGCAAUCAGCACCUGGAUCACCGGGCAU
((((((((....)))))))).....--...((((.........)))).......((.((.((((.....))))...(((...((((((....))))))....)))..)).)).. ( -25.60)
>DroPse_CAF1 4503 98 - 1
UCCUAG---------UAUAACCU-ACAUUUGU------ACAUUCCAGAUAACUCGCGCGAGAGCUCGCCGCUUCAAGAUAUCGUGCUGCAAUCAGCACCUGGAUCGCCAGGCAU
.(((.(---------(((((...-....))))------))..(((((.......((((((....))).)))...........((((((....))))))))))).....)))... ( -27.00)
>DroEre_CAF1 652 100 - 1
CCAUA----------CAAUAACUCUUCUUUUC----AUUUCUUACAGAUAAUUCGCGCGAGAGCUCACCGCUCCAAGAUAUUGUGUUGCAAUCAGCACCUGGAUCACCGGGAAU
..(((----------(((((..((((......----..........((....))....(.((((.....)))))))))))))))))(((.....)))(((((....)))))... ( -20.60)
>DroYak_CAF1 657 99 - 1
CUAUA----------CAUGAACU-UCGUUUUC----UUUCCUUGCAGAUAAUUCGCGCGAGAGCUCACCGCUCCAAGAUAUUGUGCUGCAAUCAGCACCUGGAUCACCGGGAAU
.....----------........-........----.....(((((((((((...(..(.((((.....)))))..)..))))).))))))......(((((....)))))... ( -22.40)
>DroMoj_CAF1 1017 99 - 1
ACAUU----------AAUAAACC-ACAUUGG---A-UUGCCUUACAGAUAACUCACGCGAGAGCUCGCCAUUGCAGGACAUUGUGCUGCAGUCAGCUCCUGGCUCACCGGGCAU
.....----------......((-.....))---.-.(((((....((....))..((.((((((....(((((((.((...)).))))))).)))).)).)).....))))). ( -25.30)
>DroPer_CAF1 4770 98 - 1
UCCUAG---------UAUAACCU-ACAUUUGU------ACAUUCCAGAUAACUCGCGCGAGAGCUCGCCGCUUCAAGAUAUCGUGCUGCAAUCAGCACCUGGAUCGCCAGGCAU
.(((.(---------(((((...-....))))------))..(((((.......((((((....))).)))...........((((((....))))))))))).....)))... ( -27.00)
>consensus
UCAUA__________UAUAAACU_ACAUUUGU____UUUCCUUACAGAUAACUCGCGCGAGAGCUCACCGCUCCAAGAUAUUGUGCUGCAAUCAGCACCUGGAUCACCGGGCAU
..............................................(((.....((((((((((.....)))).......))))))....)))....(((((....)))))... (-15.36 = -14.81 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:52 2006