| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 11,083,264 – 11,083,371 |
| Length | 107 |
| Max. P | 0.652860 |
| Location | 11,083,264 – 11,083,371 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 83.81 |
| Mean single sequence MFE | -31.45 |
| Consensus MFE | -23.24 |
| Energy contribution | -23.55 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.652860 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11083264 107 - 23771897 UGGGAAUCGCGGGAUAUAAAGCAUUACAGCACAAUAUCGCGAAUCCAAAAACAACUACGUCUCGGAAACUGGGAAUAUCUCUGUCAGCAUCCAGAGGUAUU--GAUGCG---- ..(((.((((((........((......))......)))))).)))...........(((.(((....)....((((((((((........))))))))))--)).)))---- ( -29.24) >DroSec_CAF1 172 111 - 1 UGGGAAUCGCGGGAUAUAAAGCAUUACAGCUCCAUAUCGCGAAUCCAAAAACAACUGCGUCUCGGAAACUGGGAAUAUCUUUGUCAGCAUCCAGAGGUAUU--GAUUCGAGUU ..(((.((((..(((((..(((......)))..))))))))).))).....(((.(((.(((.(((..((((.((.....)).))))..)))))).)))))--)......... ( -31.80) >DroSim_CAF1 2220 107 - 1 UGGGAAUCGCGGGAUAUAAAGCAUUACAGCUCAAUAUCGCGAAUCCAAAAACAACUGCGCCUCGGAAACUGGGAAUAUCUUUGUCAGCAUCCAGAGGUAUU--GAUUCG---- ...((((((((((((((..(((......)))..)))))..(....)........))))((((((((..((((.((.....)).))))..))).)))))...--))))).---- ( -32.20) >DroEre_CAF1 171 109 - 1 UGGGAUUCGCGGGACAUAAAGCACUACAGCUCAAUAUCGCGAAUCCAAAAACAGCUACGUCUCGGAAACUGGGAAUAUCUCUGUCAGCAUCCAGAGGUAGUCCCAUUCG---- ..((((((((((.......(((......))).....)))))))))).................(....)(((((.((((((((........)))))))).)))))....---- ( -38.30) >DroYak_CAF1 2051 109 - 1 UGGGAUUCGCGAGACAUAAAGCACUACUGCUCUAUAUCGCGAAUCCAAAAGCAACUACGUCUCGGAAACUGGGAGUAUCUCUGUCAGCAUCCAGAGGUAAUUACAUUCG---- ..((((((((((...(((.((((....)))).))).)))))))))).........(((.(((.(((..((((.((.....)).))))..)))))).)))..........---- ( -37.90) >DroAna_CAF1 9927 107 - 1 UGGGACUCUCAGGCCAUUCAGCAUUAUAAAUCCAUAUCAAGUAUUCAAAAGGAACUGCGUCGCGGCAAUUGGGAAUAUCUUUGUCGGCAUCCCGAGGUUCU--UAUUUC---- .(((((.(((..(((.....(((.......(((.................)))..))).....)))....((((.(..(......)..)))))))))))))--......---- ( -19.23) >consensus UGGGAAUCGCGGGACAUAAAGCAUUACAGCUCAAUAUCGCGAAUCCAAAAACAACUACGUCUCGGAAACUGGGAAUAUCUCUGUCAGCAUCCAGAGGUAUU__GAUUCG____ ..(((.((((((.......(((......))).....)))))).))).........(((.(((.(((..((((.((.....)).))))..)))))).))).............. (-23.24 = -23.55 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:51 2006