Locus 3835

Sequence ID 3L_DroMel_CAF1
Location 11,077,633 – 11,077,747
Length 114
Max. P 0.965051
window5971

overview

Window 1

Location 11,077,633 – 11,077,747
Length 114
Sequences 3
Columns 117
Reading direction forward
Mean pairwise identity 78.06
Mean single sequence MFE -43.60
Consensus MFE -32.54
Energy contribution -32.77
Covariance contribution 0.22
Combinations/Pair 1.04
Mean z-score -1.98
Structure conservation index 0.75
SVM decision value 1.58
SVM RNA-class probability 0.965051
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 11077633 114 + 23771897
CGGAGCUCGUGGAGGAGGAGCUGCUCGUGGGCGAAGUGGAUGAGCUACUCGUCGGCGAGGUGGAGGAGCUACUCGUGGGCGAUGUUGAGGU---UGCCUGCGAGGACAGGACAACCA
.(.(((((.(.....).))))).)((((.(((((.((((.....))))))))).))))(((..........((((..((((((......))---))))..)))).........))). ( -47.61)
>DroSec_CAF1 10366 93 + 1
CGGAGCUCGUGGAGGAGGAGCUGUUCGUCGGCGAGGUAGAGGAGCUGCUCGUCGGCGAG------------------------GUGGAGCUAGAGGCCUGUGAGGUCAGGACAACCA
..((.((((..(......((((.((((((((((((.(((.....)))))))))))))).------------------------..).))))......)..)))).)).((....)). ( -35.90)
>DroSim_CAF1 10210 117 + 1
CGGAGCUCGUGGAGGAGGAGCUGCUCGUGGGCGAGGUGGAGGAGCUGCUCGUCGGCGAGGUGGAGGAGCUACUCGUGGGCGAGGUGGAGCUAGAGGCCUGUGAGGACAGGACAACCA
...(.(((((.((.(((.((((.(((............))).)))).))).)).))))).)...((((((.((((....))))....))))...(.(((((....))))).)..)). ( -47.30)
>consensus
CGGAGCUCGUGGAGGAGGAGCUGCUCGUGGGCGAGGUGGAGGAGCUGCUCGUCGGCGAGGUGGAGGAGCUACUCGUGGGCGA_GUGGAGCUAGAGGCCUGUGAGGACAGGACAACCA
.((..(((((.((.(((.((((.(((............))).)))).))).)).))))).....................................((((......))))....)). (-32.54 = -32.77 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:50 2006