Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 11,076,576 – 11,076,679 |
Length | 103 |
Max. P | 0.565992 |
Location | 11,076,576 – 11,076,679 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 91.94 |
Mean single sequence MFE | -31.04 |
Consensus MFE | -25.86 |
Energy contribution | -25.46 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.13 |
Mean z-score | -1.30 |
Structure conservation index | 0.83 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.565992 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 11076576 103 - 23771897 GGUGUUCCUAAAUGGAUAUAUCUGCCUGGAACUCUAUGCGGCAACCAGGGAUCUUGACUACAAUUUCGGAUGUCAGCCAUGUCGGGUUAGCUUUGAUCCACAC (((..(((.....))).....((((.(((....))).))))..)))..(((((..(((..(......)...)))((((......))))......))))).... ( -23.70) >DroSec_CAF1 9328 103 - 1 GGUGUUCCUAAAUGGAUAUAUCUGCCUGGAACUCUAUGCGGCAUCCAGGGAUCUUGACUACAACUUCGGAUGUCAGCCAUGUCGGGUUAGCUUUGACCCGCAC ((((((((.....(((....)))....))))).......(((((((..((...(((....)))))..))))))).))).((.(((((((....))))))))). ( -31.60) >DroSim_CAF1 9168 103 - 1 GGUGUUCCUAAAUGGAUAUAUCUGCCUGGAACUCUAUGCGGCAUCCAGGGAUCUUGACUACAACUUCGGAUGUCAGCCAUGUCGGGUUAGCUUUGACCCGCAC ((((((((.....(((....)))....))))).......(((((((..((...(((....)))))..))))))).))).((.(((((((....))))))))). ( -31.60) >DroEre_CAF1 9257 103 - 1 GGUGUUCCUGAAUGGAUACAUCUGUAUGGAACUCUAUACGGCAUCCAGGGAUCUUGGCUACAACAUCGGAUGUCAGCCAUAUCGGGUUAGCUUUAACCCACAC ((((((((.....))).))))).((((((....))))))(((((((...(((.(((....))).)))))))))).........((((((....)))))).... ( -34.00) >DroYak_CAF1 9404 103 - 1 GGUAUUCCUGAAUGGAUACAUCUGUUUGGAACUCUAUACGGCAACCAGGGAUCUUGGCUACAACUUCGGAUGUCAGCCAUGCCGGGUUAGCUUUAACCCACUC ((((((((((.(((....)))((((.(((....))).))))....))))))...((((((((.(....).))).)))))))))((((((....)))))).... ( -34.30) >consensus GGUGUUCCUAAAUGGAUAUAUCUGCCUGGAACUCUAUGCGGCAUCCAGGGAUCUUGACUACAACUUCGGAUGUCAGCCAUGUCGGGUUAGCUUUGACCCACAC ((((((((.....))).))))).((.(((....))).))(((((((...((..(((....)))..))))))))).........((((((....)))))).... (-25.86 = -25.46 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:49 2006